HIPPOCAMPAL FORMATION - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:13.5 nTPM
HPA Brain:27.0 nTPM
GTEx:13.5 nTPM
FANTOM5:13.0 Scaled Tags Per Million
Pig:28.9 nTPM
Mouse:14.0 nTPM
Allen mouse:3.6 Expression energy

HIPPOCAMPAL FORMATION - Annotated protein expression
Pending normal tissue analysis

HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 27.0
Sample id Sample description nTPM
Hippocampus
nTPM: 21.0
2529 Female, age 94, left hemisphere 31.0
1855 Male, age 76, left hemisphere 20.8
1911 Female, age 85, right hemisphere 20.8
2621 Female, age 67, right hemisphere 19.2
2148 Female, age 91, left hemisphere 18.5
1898 Male, age 80, left hemisphere 15.9
Dentate gyrus
nTPM: 20.7
2530 Female, age 94, left hemisphere 28.3
2528 Male, age 74, both hemispheres 24.2
2010 Male, age 76, both hemispheres 20.5
2531 Female, age 67, both hemispheres 18.4
2246 Female, age 85, both hemispheres 18.2
1927 Female, age 91, both hemispheres 14.5
Entorhinal gyrus
nTPM: 21.9
2117 Female, age 91, right hemisphere 32.7
2764 Male, age 80, right hemisphere 25.3
2686 Male, age 75, right hemisphere 21.6
1787 Male, age 76, left hemisphere 17.5
1938 Female, age 85, left hemisphere 17.4
2613 Female, age 94, left hemisphere 17.1
Hippocampus, CA1
nTPM: 18.2
2527 Male, age 74, both hemispheres 22.2
2082 Female, age 91, right hemisphere 21.8
2045 Male, age 76, both hemispheres 19.8
1873 Female, age 85, both hemispheres 16.3
2749 Male, age 80, left hemisphere 10.9
Hippocampus, CA2
nTPM: 21.3
2437 Female, age 94, left hemisphere 26.9
2249 Male, age 74, both hemispheres 24.2
2113 Female, age 91, right hemisphere 23.8
1963 Male, age 80, left hemisphere 19.8
1940 Female, age 85, left hemisphere 18.8
1892 Male, age 76, both hemispheres 14.3
Hippocampus, CA3
nTPM: 17.8
1891 Female, age 85, both hemispheres 28.3
1867 Male, age 76, both hemispheres 21.9
2436 Male, age 74, both hemispheres 17.2
2620 Female, age 94, left hemisphere 15.8
2137 Male, age 80, left hemisphere 12.3
2861 Female, age 67, both hemispheres 11.3
Parahippocampal cortex
nTPM: 21.2
2532 Female, age 72, left hemisphere 29.1
1990 Female, age 91, right hemisphere 26.1
2692 Male, age 74, both hemispheres 25.3
2245 Female, age 91, both hemispheres 21.9
2018 Male, age 76, both hemispheres 21.8
1850 Male, age 80, both hemispheres 20.4
2693 Female, age 94, both hemispheres 20.3
1933 Female, age 85, both hemispheres 17.8
2622 Female, age 67, right hemisphere 15.1
2250 Female, age 67, right hemisphere 14.8
Perirhinal gyrus
nTPM: 18.5
2848 Male, age 76, right hemisphere 23.0
2521 Female, age 94, right hemisphere 20.0
1794 Male, age 80, right hemisphere 18.4
1841 Female, age 85, right hemisphere 16.7
1847 Female, age 91, left hemisphere 14.2
Subiculum
nTPM: 27.0
1901 Male, age 80, both hemispheres 30.5
2042 Male, age 76, both hemispheres 29.4
2438 Female, age 94, left hemisphere 29.4
1977 Female, age 85, both hemispheres 25.2
2729 Female, age 91, right hemisphere 25.0
2619 Male, age 74, both hemispheres 22.6

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 13.5
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 13.5
Samples: 197

Max nTPM: 39.7
Min nTPM: 4.6
Std nTPM: 6.0
Median nTPM: 11.6
GTEX-13NZ8-0011-R1b-SM-5KM3V 60-69 years, female 39.7
GTEX-18A6Q-0011-R1b-SM-731DI 60-69 years, male 38.5
GTEX-13QIC-0011-R1a-SM-5O9CJ 60-69 years, female 34.1
GTEX-1H23P-0011-R1a-SM-ACKVC 60-69 years, male 32.4
GTEX-13QJC-0011-R1b-SM-5S2UU 60-69 years, female 27.9
GTEX-13NZA-0011-R1b-SM-5LUAF 60-69 years, male 27.2
GTEX-15UF6-0011-R1a-SM-9QEGH 70-79 years, female 27.0
GTEX-UTHO-0011-R1A-SM-3GIJO 60-69 years, male 26.3
GTEX-13OW5-0011-R1b-SM-5L3GE 60-69 years, male 25.9
GTEX-14LZ3-0011-R1a-SM-69LP5 60-69 years, female 24.8
GTEX-1H4P4-0011-R1b-SM-CL54V 50-59 years, male 24.8
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 13.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 13.0
FF:10153-102I9 76 years, female 15.6
FF:10169-103B7 60 years, female 10.3

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 28.9
Pig sample Sample description nTPM
Subiculum
nTPM: 18.5
Samples: 4

Max nTPM: 20.7
Min nTPM: 16.6
Sample A Female 20.7
Sample B Female 19.2
Sample C Male 16.6
Sample D Male 17.3
Dorsal hippocampus
nTPM: 29.0
Samples: 4

Max nTPM: 40.4
Min nTPM: 19.4
Sample A Female 34.2
Sample B Female 21.8
Sample C Male 40.4
Sample D Male 19.4
Entorhinal cortex
nTPM: 24.3
Samples: 4

Max nTPM: 27.3
Min nTPM: 21.5
Sample A Female 22.7
Sample B Female 27.3
Sample C Male 21.5
Sample D Male 25.8
Ventral hippocampus
nTPM: 23.3
Samples: 4

Max nTPM: 26.7
Min nTPM: 17.1
Sample A Female 25.3
Sample B Female 17.1
Sample C Male 24.0
Sample D Male 26.7

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 14.0
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 14.0
Samples: 4

Max nTPM: 17.0
Min nTPM: 10.5
Sample A Male 16.1
Sample B Male 17.0
Sample C Female 12.5
Sample D Female 10.5
Hippocampal formation
nTPM: 13.4
Samples: 4

Max nTPM: 14.5
Min nTPM: 11.8
Sample A Male 11.8
Sample B Male 13.9
Sample C Female 14.5
Sample D Female 13.2

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 3.6
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 3.6
71656873 Antisense, RP_050927_04_E01, Mouse strain C57BL/6J (56 days, male) 3.6

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