MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:8.7 nTPM
HPA Brain:48.3 nTPM
GTEx:8.7 nTPM
FANTOM5:17.0 Scaled Tags Per Million
Pig:28.4 nTPM
Mouse:17.7 nTPM
Allen mouse:1.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 48.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 38.9
2411 Female, age 72, unknown 54.2
2586 Male, age 75, left hemisphere 48.3
1827 Male, age 72, unknown 44.6
1870 Female, age 42, unknown 40.6
2828 Female, age 72, unknown 35.3
2219 Male, age 76, both hemispheres 34.5
1833 Male, age 53, unknown 33.4
2666 Male, age 74, left hemisphere 33.1
1830 Male, age 51, unknown 33.0
2019 Male, age 18, unknown 31.8
Dorsal raphe nucleus
nTPM: 31.6
2750 Male, age 76, both hemispheres 36.6
1828 Male, age 53, unknown 35.3
2298 Female, age 72, unknown 32.5
2016 Female, age 72, unknown 28.2
2047 Male, age 72, unknown 25.2
Inferior colliculus
nTPM: 39.9
2097 Female, age 72, unknown 45.3
1890 Male, age 53, unknown 41.0
1848 Female, age 42, unknown 38.2
2849 Male, age 72, unknown 35.1
Median raphe nucleus
nTPM: 27.5
2220 Male, age 76, midline 27.5
Periaquaductal grey, anterior
nTPM: 48.3
1795 Male, age 51, unknown 51.3
2502 Female, age 75, unknown 50.4
1947 Male, age 18, unknown 43.2
Periaquaductal grey, dorsal
nTPM: 35.9
1840 Male, age 53, unknown 38.4
1831 Male, age 72, unknown 37.8
2464 Female, age 72, unknown 33.7
2850 Male, age 76, both hemispheres 33.6
Periaquaductal grey, lateral
nTPM: 41.0
2053 Male, age 18, unknown 48.4
2272 Male, age 74, both hemispheres 39.2
2140 Male, age 76, both hemispheres 35.3
Pretectal area
nTPM: 41.6
1816 Male, age 51, unknown 53.8
2407 Male, age 75, both hemispheres 50.6
2007 Male, age 72, unknown 46.6
1815 Male, age 53, unknown 44.8
2667 Female, age 75, unknown 43.2
2825 Male, age 18, unknown 42.5
1944 Female, age 72, unknown 39.6
2273 Male, age 74, both hemispheres 36.7
2316 Male, age 76, right hemisphere 33.6
1817 Female, age 42, unknown 33.2
2224 Female, age 72, unknown 32.4
Red nucleus
nTPM: 37.5
2584 Male, age 75, left hemisphere 44.7
2769 Male, age 72, unknown 42.1
2227 Male, age 72, unknown 41.8
1954 Female, age 42, unknown 40.2
1821 Female, age 72, unknown 39.9
2588 Male, age 74, left hemisphere 39.2
1904 Male, age 53, unknown 37.8
1865 Male, age 51, unknown 36.1
2503 Female, age 72, unknown 33.9
2785 Male, age 18, unknown 33.5
2823 Male, age 76, right hemisphere 31.6
2725 Female, age 75, unknown 29.6
Substantia nigra
nTPM: 40.5
2590 Female, age 75, unknown 50.2
2583 Male, age 75, right hemisphere 48.7
1916 Female, age 42, unknown 43.5
1851 Male, age 51, unknown 41.9
2241 Male, age 72, unknown 40.3
2409 Female, age 72, unknown 37.3
1889 Female, age 72, unknown 37.1
2665 Male, age 74, both hemispheres 37.1
2699 Male, age 18, unknown 35.3
1941 Male, age 53, unknown 33.2
Superior colliculus
nTPM: 40.4
2261 Male, age 18, unknown 54.6
2664 Male, age 75, both hemispheres 49.6
1796 Male, age 53, unknown 46.2
2587 Male, age 74, left hemisphere 41.1
1913 Female, age 42, unknown 38.8
2668 Female, age 75, unknown 36.2
1839 Male, age 51, unknown 35.7
1895 Male, age 76, right hemisphere 35.3
2087 Female, age 72, unknown 35.2
1995 Male, age 72, unknown 31.3
Ventral tegmental area
nTPM: 38.0
2223 Female, age 72, unknown 44.5
1915 Female, age 42, unknown 41.7
2410 Female, age 72, unknown 40.2
2218 Male, age 76, both hemispheres 34.6
1942 Male, age 51, unknown 34.5
2021 Male, age 53, unknown 32.5

MIDBRAIN - GTEx RNA-seqi
Average nTPM 8.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 8.7
Samples: 139

Max nTPM: 18.2
Min nTPM: 3.6
Std nTPM: 2.6
Median nTPM: 8.4
GTEX-N7MS-0011-R2a-SM-2HML6 60-69 years, male 18.2
GTEX-WHSE-0011-R2A-SM-3P5ZL 20-29 years, male 17.6
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 16.0
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 15.7
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 15.6
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 15.4
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 14.3
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 14.0
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 13.5
GTEX-1HFI6-0011-R2a-SM-CMKH5 40-49 years, male 12.5
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 12.4
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 17.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 17.0
FF:10158-103A5 76 years, female 17.0

MIDBRAIN - Pig RNA-seqi
Average nTPM 28.4
Pig sample Sample description nTPM
Substantia nigra
nTPM: 24.0
Samples: 4

Max nTPM: 26.2
Min nTPM: 21.2
Sample A Female 23.8
Sample B Female 26.2
Sample C Male 24.9
Sample D Male 21.2
Midbrain
nTPM: 28.4
Samples: 4

Max nTPM: 43.5
Min nTPM: 21.5
Sample A Female 23.0
Sample B Female 21.5
Sample C Male 43.5
Sample D Male 25.7
Periaqueductal gray
nTPM: 20.0
Samples: 3

Max nTPM: 22.9
Min nTPM: 16.0
Sample B Female 22.9
Sample C Male 21.1
Sample D Male 16.0
Superior colliculi
nTPM: 26.8
Samples: 4

Max nTPM: 28.2
Min nTPM: 23.3
Sample A Female 28.2
Sample B Female 27.7
Sample C Male 27.9
Sample D Male 23.3

MIDBRAIN - Mouse RNA-seqi
Average nTPM 17.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 17.7
Samples: 4

Max nTPM: 20.4
Min nTPM: 14.1
Sample A Male 14.1
Sample B Male 17.9
Sample C Female 20.4
Sample D Female 18.3

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 1.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.0
73573247 Antisense, RP_051121_03_F01, Mouse strain C57BL/6J (56 days, male) 1.0

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