MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:37.4 nTPM
HPA Brain:37.7 nTPM
GTEx:37.4 nTPM
FANTOM5:51.2 Scaled Tags Per Million
Pig:24.0 nTPM
Mouse:37.7 nTPM
Allen mouse:3.0 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 37.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 35.7
2586 Male, age 75, left hemisphere 46.5
2666 Male, age 74, left hemisphere 43.4
2828 Female, age 72, unknown 40.6
2019 Male, age 18, unknown 36.7
1870 Female, age 42, unknown 34.2
1827 Male, age 72, unknown 32.6
1833 Male, age 53, unknown 31.2
1830 Male, age 51, unknown 31.1
2411 Female, age 72, unknown 31.0
2219 Male, age 76, both hemispheres 29.9
Dorsal raphe nucleus
nTPM: 35.3
2016 Female, age 72, unknown 40.4
2047 Male, age 72, unknown 39.0
1828 Male, age 53, unknown 35.6
2298 Female, age 72, unknown 33.5
2750 Male, age 76, both hemispheres 27.8
Inferior colliculus
nTPM: 35.4
1890 Male, age 53, unknown 37.8
2849 Male, age 72, unknown 35.6
1848 Female, age 42, unknown 34.9
2097 Female, age 72, unknown 33.3
Median raphe nucleus
nTPM: 33.1
2220 Male, age 76, midline 33.1
Periaquaductal grey, anterior
nTPM: 36.5
1947 Male, age 18, unknown 37.7
2502 Female, age 75, unknown 36.9
1795 Male, age 51, unknown 34.9
Periaquaductal grey, dorsal
nTPM: 37.7
1831 Male, age 72, unknown 41.0
1840 Male, age 53, unknown 39.7
2850 Male, age 76, both hemispheres 36.4
2464 Female, age 72, unknown 33.7
Periaquaductal grey, lateral
nTPM: 33.8
2053 Male, age 18, unknown 37.5
2140 Male, age 76, both hemispheres 36.3
2272 Male, age 74, both hemispheres 27.5
Pretectal area
nTPM: 35.5
1944 Female, age 72, unknown 38.6
2407 Male, age 75, both hemispheres 38.6
1817 Female, age 42, unknown 37.8
2667 Female, age 75, unknown 37.2
1816 Male, age 51, unknown 36.1
1815 Male, age 53, unknown 35.0
2007 Male, age 72, unknown 34.9
2273 Male, age 74, both hemispheres 34.3
2825 Male, age 18, unknown 33.1
2224 Female, age 72, unknown 32.9
2316 Male, age 76, right hemisphere 32.3
Red nucleus
nTPM: 35.4
2584 Male, age 75, left hemisphere 39.2
1821 Female, age 72, unknown 37.9
1954 Female, age 42, unknown 37.3
2503 Female, age 72, unknown 37.3
2588 Male, age 74, left hemisphere 36.3
2769 Male, age 72, unknown 35.6
2227 Male, age 72, unknown 35.5
1865 Male, age 51, unknown 35.2
1904 Male, age 53, unknown 34.6
2725 Female, age 75, unknown 34.4
2785 Male, age 18, unknown 31.2
2823 Male, age 76, right hemisphere 30.4
Substantia nigra
nTPM: 36.0
2665 Male, age 74, both hemispheres 41.4
2583 Male, age 75, right hemisphere 41.0
1851 Male, age 51, unknown 40.2
2699 Male, age 18, unknown 39.6
1941 Male, age 53, unknown 35.3
1916 Female, age 42, unknown 34.1
2590 Female, age 75, unknown 33.0
1889 Female, age 72, unknown 32.9
2409 Female, age 72, unknown 32.8
2241 Male, age 72, unknown 30.2
Superior colliculus
nTPM: 35.5
2664 Male, age 75, both hemispheres 45.9
1796 Male, age 53, unknown 37.5
2668 Female, age 75, unknown 37.1
1995 Male, age 72, unknown 37.0
1913 Female, age 42, unknown 35.4
2587 Male, age 74, left hemisphere 33.7
1839 Male, age 51, unknown 33.1
1895 Male, age 76, right hemisphere 32.9
2261 Male, age 18, unknown 32.1
2087 Female, age 72, unknown 30.0
Ventral tegmental area
nTPM: 35.4
1942 Male, age 51, unknown 39.1
2410 Female, age 72, unknown 37.5
1915 Female, age 42, unknown 36.5
2223 Female, age 72, unknown 36.0
2021 Male, age 53, unknown 34.2
2218 Male, age 76, both hemispheres 28.8

MIDBRAIN - GTEx RNA-seqi
Average nTPM 37.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 37.4
Samples: 139

Max nTPM: 85.9
Min nTPM: 21.8
Std nTPM: 11.1
Median nTPM: 34.6
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 85.9
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 81.7
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 79.1
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 68.0
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 64.5
GTEX-1C6VR-0011-R2a-SM-7RHGZ 60-69 years, male 62.5
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 62.5
GTEX-17HG3-0011-R2a-SM-7MGVX 30-39 years, female 61.2
GTEX-1H3O1-0011-R2b-SM-CKZOT 60-69 years, male 55.6
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 55.4
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 55.2
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 51.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 51.2
FF:10158-103A5 76 years, female 51.2

MIDBRAIN - Pig RNA-seqi
Average nTPM 24.0
Pig sample Sample description nTPM
Substantia nigra
nTPM: 18.9
Samples: 4

Max nTPM: 21.7
Min nTPM: 16.2
Sample A Female 21.7
Sample B Female 16.2
Sample C Male 21.3
Sample D Male 16.5
Midbrain
nTPM: 22.3
Samples: 4

Max nTPM: 26.9
Min nTPM: 16.7
Sample A Female 26.9
Sample B Female 16.7
Sample C Male 24.0
Sample D Male 21.6
Periaqueductal gray
nTPM: 20.0
Samples: 3

Max nTPM: 21.9
Min nTPM: 19.0
Sample B Female 19.0
Sample C Male 21.9
Sample D Male 19.1
Superior colliculi
nTPM: 24.0
Samples: 4

Max nTPM: 25.9
Min nTPM: 22.2
Sample A Female 25.6
Sample B Female 25.9
Sample C Male 22.3
Sample D Male 22.2

MIDBRAIN - Mouse RNA-seqi
Average nTPM 37.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 37.8
Samples: 4

Max nTPM: 39.7
Min nTPM: 36.9
Sample A Male 39.7
Sample B Male 37.4
Sample C Female 36.9
Sample D Female 37.0

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 3.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 3.0
68745492 Antisense, RP_050210_02_A10, Mouse strain C57BL/6J (56 days, male) 3.0

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