We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Average nTPM
43.9
GTEx sample id
Sample description
nTPM
Brain - Amygdala Average nTPM: 43.9
Samples: 152
Max nTPM: 136.6
Min nTPM: 2.5
Std nTPM: 24.3
Median nTPM: 39.0
GTEX-13NYB-0011-R4b-SM-9QEGJ
40-49 years, male
136.6
GTEX-131YS-0011-R4a-SM-5DUVL
60-69 years, female
133.2
GTEX-1JMQJ-0011-R4b-SM-EXUT8
50-59 years, male
109.2
GTEX-13X6J-0011-R4b-SM-5P9K4
50-59 years, male
102.5
GTEX-X4XX-0011-R4B-SM-46MWL
60-69 years, male
100.0
GTEX-1LVAO-0011-R4a-SM-EXURO
60-69 years, male
98.8
GTEX-14JIY-0011-R4b-SM-5ZZV7
60-69 years, male
88.8
GTEX-ZVZQ-0011-R4b-SM-57WCZ
60-69 years, female
87.7
GTEX-P44G-0011-R4A-SM-2I3FB
30-39 years, male
84.0
GTEX-1E1VI-0011-R4b-SM-9QEHV
50-59 years, male
81.7
GTEX-TSE9-0011-R4A-SM-3DB7H
60-69 years, female
79.5
GTEX-12WSD-0011-R4b-SM-5LZUA
60-69 years, female
79.3
GTEX-14ABY-0011-R4b-SM-5S2VN
50-59 years, male
79.3
GTEX-1313W-0011-R4b-SM-5KLZV
50-59 years, female
78.4
GTEX-11PRG-0011-R4a-SM-DNZZR
50-59 years, male
76.9
GTEX-1B8L1-0011-R4a-SM-7EWFJ
60-69 years, male
75.6
GTEX-1IY9M-0011-R4a-SM-C1YQ2
60-69 years, male
72.6
GTEX-13SLX-0011-R4a-SM-5O9BJ
50-59 years, female
71.6
GTEX-P44H-0011-R4A-SM-2XCEW
40-49 years, male
71.4
GTEX-13OW6-0011-R4a-SM-5O9DX
50-59 years, male
71.0
GTEX-WVLH-0011-R4A-SM-3MJFS
50-59 years, male
68.8
GTEX-1C6WA-0011-R4a-SM-9QEH2
60-69 years, male
68.3
GTEX-16YQH-0011-R4a-SM-7EPGI
30-39 years, male
67.4
GTEX-17EVP-0011-R4a-SM-79OML
40-49 years, male
67.0
GTEX-139T8-0011-R4a-SM-5HL54
60-69 years, male
66.8
GTEX-15DYW-0011-R4a-SM-6M46V
60-69 years, female
66.1
GTEX-Q2AG-0011-R4A-SM-2HMKA
40-49 years, female
65.4
GTEX-15EO6-0011-R4a-SM-7KUKZ
50-59 years, male
65.1
GTEX-1F75A-0011-R4a-SM-ARL8J
50-59 years, male
64.6
GTEX-13N1W-0011-R4a-SM-5MR52
70-79 years, male
64.3
GTEX-1F7RK-0011-R4b-SM-9QEI7
20-29 years, female
64.2
GTEX-14DAQ-0011-R4a-SM-5YYAI
60-69 years, female
62.8
GTEX-15DCD-0011-R4a-SM-69LPB
70-79 years, female
62.1
GTEX-14JG1-0011-R4b-SM-62LEB
40-49 years, male
60.9
GTEX-1F6IF-0011-R4b-SM-CKZNJ
60-69 years, male
60.8
GTEX-NL3H-0011-R4a-SM-2I3GK
60-69 years, male
60.2
GTEX-1HFI6-0011-R4b-SM-A96RT
40-49 years, male
58.9
GTEX-1GZ4I-0011-R4a-SM-9QEI9
50-59 years, male
57.6
GTEX-1HB9E-0011-R4b-SM-ARZLS
50-59 years, male
56.7
GTEX-13X6K-0011-R4b-SM-5P9HO
60-69 years, female
56.2
GTEX-1H1CY-0011-R4b-SM-CJI3G
60-69 years, female
55.9
GTEX-17HG3-0011-R4a-SM-7IGLL
30-39 years, female
55.6
GTEX-1I1GR-0011-R4a-SM-CMKHC
60-69 years, male
55.3
GTEX-11TTK-0011-R4a-SM-DNZZU
60-69 years, female
53.9
GTEX-1GMR8-0011-R4a-SM-9OSX1
50-59 years, female
53.8
GTEX-13O3O-0011-R4b-SM-5KM3F
60-69 years, female
53.6
GTEX-QVJO-0011-R4A-SM-2S1QL
60-69 years, female
52.6
GTEX-15SHU-0011-R4b-SM-7IGLC
40-49 years, female
52.4
GTEX-11NUK-0011-R4a-SM-DO12B
50-59 years, male
51.3
GTEX-14BIM-0011-R4b-SM-5S2RK
60-69 years, female
50.8
GTEX-1EMGI-0011-R4b-SM-CJI2D
60-69 years, male
50.3
GTEX-1ICLZ-0011-R4a-SM-CMKHL
60-69 years, male
50.2
GTEX-11ONC-0011-R4b-SM-DO93H
60-69 years, male
49.4
GTEX-14PJM-0011-R4a-SM-5YYAS
50-59 years, female
48.8
GTEX-15ER7-0011-R4a-SM-6M46S
20-29 years, female
48.6
GTEX-1HBPH-0011-R4a-SM-A96RX
40-49 years, female
47.7
GTEX-145LS-0011-R4b-SM-5S2UT
60-69 years, female
47.6
GTEX-1399T-0011-R4b-SM-5DUVX
60-69 years, male
47.5
GTEX-ZAK1-0011-R4a-SM-6AJBK
50-59 years, female
47.3
GTEX-13VXU-0011-R4b-SM-5O9CI
50-59 years, male
47.2
GTEX-147GR-0011-R4a-SM-5S2V2
60-69 years, male
47.0
GTEX-1A3MX-0011-R4b-SM-7EWFK
60-69 years, male
46.8
GTEX-X585-0011-R4B-SM-46MVH
50-59 years, male
46.6
GTEX-QVUS-0011-R4A-SM-3GAE7
60-69 years, female
46.4
GTEX-13FLV-0011-R4a-SM-5LZYU
50-59 years, male
46.3
GTEX-Y8DK-0011-R4A-SM-EXUR1
60-69 years, male
45.9
GTEX-15DDE-0011-R4b-SM-7KULI
50-59 years, female
45.8
GTEX-QDT8-0011-R4A-SM-32PKM
30-39 years, female
43.7
GTEX-13PVQ-0011-R4a-SM-5O9CT
50-59 years, male
42.9
GTEX-14E7W-0011-R4b-SM-62LEA
70-79 years, male
42.7
GTEX-15CHQ-0011-R4a-SM-686ZX
60-69 years, male
42.4
GTEX-1JJEA-0011-R4a-SM-EXUTC
60-69 years, male
41.6
GTEX-13O3Q-0011-R4a-SM-5P9H2
50-59 years, male
41.1
GTEX-1GN73-0011-R4b-SM-9QEIK
60-69 years, male
41.0
GTEX-RNOR-0011-R4A-SM-3GAD3
50-59 years, female
40.4
GTEX-1N2EE-0011-R4a-SM-EXOII
60-69 years, male
39.1
GTEX-T5JC-0011-R4A-SM-32PLT
20-29 years, male
39.0
GTEX-14PN4-0011-R4a-SM-686ZT
50-59 years, male
38.7
GTEX-1HBPI-0011-R4a-SM-CJI3K
50-59 years, male
38.4
GTEX-N7MS-0011-R4a-SM-2HMKW
60-69 years, male
37.9
GTEX-13NYS-0011-R4b-SM-5MR3O
60-69 years, male
37.0
GTEX-WZTO-0011-R4A-SM-3NMC7
40-49 years, male
36.7
GTEX-ZAB4-0011-R4a-SM-4SOKB
40-49 years, male
36.3
GTEX-13OW7-0011-R4b-SM-5O9CX
50-59 years, male
35.8
GTEX-XLM4-0011-R4B-SM-4AT5C
60-69 years, male
35.7
GTEX-1AX9I-0011-R4b-SM-7EPIB
60-69 years, male
35.6
GTEX-UTHO-0011-R4A-SM-3GIJP
60-69 years, male
35.6
GTEX-NPJ8-0011-R4a-SM-2HML3
40-49 years, male
35.4
GTEX-NPJ7-0011-R4a-SM-2I3GJ
60-69 years, female
33.7
GTEX-R55E-0011-R4A-SM-2TC5H
20-29 years, male
33.6
GTEX-N7MT-0011-R4a-SM-2I3G9
60-69 years, female
33.1
GTEX-NL4W-0011-R4a-SM-2I5GZ
50-59 years, male
32.3
GTEX-1CB4G-0011-R4b-SM-CJI28
60-69 years, male
32.3
GTEX-131XH-0011-R4b-SM-5DUWB
50-59 years, male
31.6
GTEX-1EX96-0011-R4a-SM-ARU82
50-59 years, male
31.4
GTEX-1J1OQ-0011-R4a-SM-D4P2A
40-49 years, female
31.1
GTEX-17F97-0011-R4b-SM-7KFS2
50-59 years, male
30.8
GTEX-14JFF-0011-R4a-SM-5ZZV5
60-69 years, male
30.7
GTEX-13RTJ-0011-R4b-SM-5PNX1
60-69 years, male
30.6
GTEX-1C6VR-0011-R4b-SM-9QEGZ
60-69 years, male
30.3
GTEX-12WSA-0011-R4a-SM-57WB7
60-69 years, male
30.0
GTEX-S7SE-0011-R4A-SM-2XCDB
50-59 years, male
29.6
GTEX-1J8Q2-0011-R4a-SM-ADEHA
60-69 years, male
29.6
GTEX-12WSF-0011-R4b-SM-5HL88
70-79 years, male
29.5
GTEX-1H3NZ-0011-R4a-SM-CL54T
60-69 years, male
29.5
GTEX-14ASI-0011-R4a-SM-69LQ4
60-69 years, male
29.4
GTEX-1GTWX-0011-R4a-SM-C1YQI
60-69 years, male
29.2
GTEX-13QIC-0011-R4a-SM-5PNX8
60-69 years, female
29.1
GTEX-T6MN-0011-R4A-SM-32QPG
50-59 years, male
29.1
GTEX-13OVH-0011-R4a-SM-5KM3W
70-79 years, male
29.0
GTEX-1LSVX-0011-R4b-SM-EXURP
60-69 years, male
29.0
GTEX-13OW5-0011-R4b-SM-5L3HS
60-69 years, male
28.9
GTEX-18464-0011-R4a-SM-7LG6T
50-59 years, male
28.9
GTEX-1HCU6-0011-R4b-SM-ARU74
60-69 years, female
28.9
GTEX-1H3O1-0011-R4b-SM-A9SKE
60-69 years, male
28.4
GTEX-WHSE-0011-R4A-SM-3P5ZN
20-29 years, male
27.9
GTEX-14PQA-0011-R4b-SM-6AJBU
50-59 years, female
27.8
GTEX-YFC4-0011-R4a-SM-4RGLQ
40-49 years, female
27.1
GTEX-1GF9W-0011-R4a-SM-CE6RH
60-69 years, male
27.1
GTEX-13OW8-0011-R4a-SM-9WG6V
60-69 years, male
26.9
GTEX-13JVG-0011-R4a-SM-5MR4C
60-69 years, male
26.0
GTEX-1H1DG-0011-R4a-SM-CE6RQ
70-79 years, male
25.9
GTEX-1N2DW-0011-R4b-SM-EZ6MD
50-59 years, male
25.7
GTEX-13X6I-0011-R4b-SM-5PNU9
60-69 years, male
25.6
GTEX-12WSH-0011-R4a-SM-5GU6K
50-59 years, male
23.7
GTEX-1B996-0011-R4b-SM-9OSVO
60-69 years, male
23.0
GTEX-1JN6P-0011-R4a-SM-EZ6MS
60-69 years, male
22.8
GTEX-144GL-0011-R4a-SM-5PNUI
50-59 years, male
22.3
GTEX-13OVL-0011-R4b-SM-5L3HV
50-59 years, male
21.7
GTEX-1J8EW-0011-R4b-SM-ARU89
60-69 years, female
19.9
GTEX-11ZU8-0011-R4a-SM-5BC6Y
60-69 years, male
18.9
GTEX-ZE9C-0011-R4a-SM-4WKH6
60-69 years, male
18.5
GTEX-12ZZZ-0011-R4b-SM-5DUV7
60-69 years, male
18.3
GTEX-1H1ZS-0011-R4b-SM-CKZO7
70-79 years, male
18.0
GTEX-13112-0011-R4b-SM-5DUXL
50-59 years, male
17.3
GTEX-145MI-0011-R4b-SM-5PNZH
60-69 years, female
17.1
GTEX-1F48J-0011-R4b-SM-9OSVX
50-59 years, female
17.0
GTEX-OHPN-0011-R4A-SM-2I5FD
60-69 years, female
16.1
GTEX-QMR6-0011-R4A-SM-32PKU
50-59 years, male
15.7
GTEX-13N2G-0011-R4b-SM-5MR54
60-69 years, male
15.1
GTEX-13CZV-0011-R4b-SM-5J2NY
60-69 years, male
14.9
GTEX-183WM-0011-R4a-SM-7LG6S
70-79 years, female
13.8
GTEX-12ZZW-0011-R4a-SM-5DUX9
50-59 years, male
11.8
GTEX-13SLW-0011-R4b-SM-5S2W2
70-79 years, male
10.2
GTEX-1H2FU-0011-R4a-SM-CL551
60-69 years, female
9.7
GTEX-11ZVC-0011-R4a-SM-5BC6Z
50-59 years, female
9.1
GTEX-17EVQ-0011-R4b-SM-7LT94
70-79 years, male
8.9
GTEX-1H23P-0011-R4b-SM-CL54R
60-69 years, male
8.0
GTEX-13OVJ-0011-R4b-SM-5P9H5
50-59 years, female
6.2
GTEX-1445S-0011-R4a-SM-5PNWN
60-69 years, male
5.6
GTEX-1CB4J-0011-R4b-SM-9WG5P
60-69 years, male
3.9
GTEX-X4EP-0011-R4B-SM-3P627
60-69 years, female
2.5
Show allShow less
AMYGDALA - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Average nTPM
55.1
Mouse sample
Sample description
nTPM
Amygdala nTPM: 55.1
Samples: 4
Max nTPM: 77.0
Min nTPM: 32.6
Sample A
Male
77.0
Sample B
Male
50.3
Sample C
Female
32.6
Sample D
Female
60.4
AMYGDALA - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
The Human Protein Atlas project is funded
