MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:434.8 nTPM
HPA Brain:463.8 nTPM
GTEx:434.8 nTPM
FANTOM5:248.9 Scaled Tags Per Million
Pig:56.2 nTPM
Mouse:511.8 nTPM
Allen mouse:14.5 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 463.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 394.9
2019 Male, age 18, unknown 564.6
2666 Male, age 74, left hemisphere 486.4
2828 Female, age 72, unknown 437.6
2586 Male, age 75, left hemisphere 429.1
2411 Female, age 72, unknown 358.4
1827 Male, age 72, unknown 352.2
1870 Female, age 42, unknown 343.7
1833 Male, age 53, unknown 339.3
1830 Male, age 51, unknown 337.3
2219 Male, age 76, both hemispheres 299.7
Dorsal raphe nucleus
nTPM: 359.9
2750 Male, age 76, both hemispheres 390.4
2298 Female, age 72, unknown 381.1
1828 Male, age 53, unknown 370.5
2047 Male, age 72, unknown 352.5
2016 Female, age 72, unknown 305.2
Inferior colliculus
nTPM: 358.3
2097 Female, age 72, unknown 429.6
1890 Male, age 53, unknown 370.6
1848 Female, age 42, unknown 337.9
2849 Male, age 72, unknown 295.1
Median raphe nucleus
nTPM: 377.0
2220 Male, age 76, midline 377.0
Periaquaductal grey, anterior
nTPM: 398.4
2502 Female, age 75, unknown 451.8
1795 Male, age 51, unknown 404.9
1947 Male, age 18, unknown 338.4
Periaquaductal grey, dorsal
nTPM: 288.4
2464 Female, age 72, unknown 323.4
1831 Male, age 72, unknown 282.3
2850 Male, age 76, both hemispheres 276.6
1840 Male, age 53, unknown 271.3
Periaquaductal grey, lateral
nTPM: 297.4
2272 Male, age 74, both hemispheres 321.5
2140 Male, age 76, both hemispheres 297.5
2053 Male, age 18, unknown 273.2
Pretectal area
nTPM: 406.4
1817 Female, age 42, unknown 621.3
2007 Male, age 72, unknown 603.6
1944 Female, age 72, unknown 506.8
1816 Male, age 51, unknown 476.4
1815 Male, age 53, unknown 447.0
2667 Female, age 75, unknown 389.6
2224 Female, age 72, unknown 324.8
2316 Male, age 76, right hemisphere 314.0
2825 Male, age 18, unknown 279.6
2273 Male, age 74, both hemispheres 263.2
2407 Male, age 75, both hemispheres 244.2
Red nucleus
nTPM: 463.8
2588 Male, age 74, left hemisphere 595.3
2785 Male, age 18, unknown 561.2
1904 Male, age 53, unknown 491.3
1954 Female, age 42, unknown 482.9
1821 Female, age 72, unknown 475.7
2503 Female, age 72, unknown 468.2
2227 Male, age 72, unknown 457.4
2769 Male, age 72, unknown 455.1
1865 Male, age 51, unknown 451.4
2823 Male, age 76, right hemisphere 422.3
2725 Female, age 75, unknown 390.1
2584 Male, age 75, left hemisphere 314.6
Substantia nigra
nTPM: 413.3
1916 Female, age 42, unknown 529.2
2665 Male, age 74, both hemispheres 514.5
1889 Female, age 72, unknown 493.2
1851 Male, age 51, unknown 464.6
2590 Female, age 75, unknown 395.8
1941 Male, age 53, unknown 382.1
2241 Male, age 72, unknown 360.2
2699 Male, age 18, unknown 343.1
2409 Female, age 72, unknown 338.2
2583 Male, age 75, right hemisphere 312.3
Superior colliculus
nTPM: 365.6
2087 Female, age 72, unknown 499.4
2261 Male, age 18, unknown 420.6
1796 Male, age 53, unknown 414.0
2668 Female, age 75, unknown 378.2
1995 Male, age 72, unknown 361.2
1913 Female, age 42, unknown 352.8
2587 Male, age 74, left hemisphere 341.0
2664 Male, age 75, both hemispheres 313.2
1839 Male, age 51, unknown 293.1
1895 Male, age 76, right hemisphere 282.6
Ventral tegmental area
nTPM: 373.9
2218 Male, age 76, both hemispheres 403.7
2410 Female, age 72, unknown 400.9
1915 Female, age 42, unknown 397.6
1942 Male, age 51, unknown 371.0
2223 Female, age 72, unknown 357.5
2021 Male, age 53, unknown 312.8

MIDBRAIN - GTEx RNA-seqi
Average nTPM 434.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 434.8
Samples: 139

Max nTPM: 1603.6
Min nTPM: 211.8
Std nTPM: 186.9
Median nTPM: 393.5
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 1603.6
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 1174.5
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 1079.4
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 965.1
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 868.7
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 862.3
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 856.5
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 832.0
GTEX-17HG3-0011-R2a-SM-7MGVX 30-39 years, female 715.2
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 693.2
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 626.9
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 248.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 248.9
FF:10158-103A5 76 years, female 248.9

MIDBRAIN - Pig RNA-seqi
Average nTPM 56.2
Pig sample Sample description nTPM
Substantia nigra
nTPM: 44.8
Samples: 4

Max nTPM: 51.8
Min nTPM: 38.6
Sample A Female 51.8
Sample B Female 38.6
Sample C Male 46.2
Sample D Male 42.5
Midbrain
nTPM: 51.6
Samples: 4

Max nTPM: 64.8
Min nTPM: 38.4
Sample A Female 64.8
Sample B Female 38.4
Sample C Male 60.8
Sample D Male 42.4
Periaqueductal gray
nTPM: 38.0
Samples: 3

Max nTPM: 42.6
Min nTPM: 35.4
Sample B Female 35.9
Sample C Male 42.6
Sample D Male 35.4
Superior colliculi
nTPM: 56.2
Samples: 4

Max nTPM: 60.8
Min nTPM: 51.8
Sample A Female 59.5
Sample B Female 51.8
Sample C Male 60.8
Sample D Male 52.7

MIDBRAIN - Mouse RNA-seqi
Average nTPM 511.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 511.8
Samples: 4

Max nTPM: 534.7
Min nTPM: 485.1
Sample A Male 531.2
Sample B Male 496.0
Sample C Female 485.1
Sample D Female 534.7

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 14.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 14.5
167 Antisense, RP_Baylor_102648, Mouse strain C57BL/6J (56 days, male) 14.5
166 Antisense, RP_Baylor_102648, Mouse strain C57BL/6J (56 days, male) 13.1

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