HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Not detected
Neuronal cells: Not detected
Mouse brain, Intensity
Hippocampal formationi 		60.438
RNA expressioni
Consensus:11.0 nTPM
HPA Brain:20.0 nTPM
GTEx:11.0 nTPM
FANTOM5:46.1 Scaled Tags Per Million
Pig:35.7 nTPM
Mouse:60.2 nTPM
Allen mouse:1.5 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA057790Antibody HPA062208
Glial cells Not detectedNot detected
Neuronal cells Not detectedNot detected





HIPPOCAMPAL FORMATION - Mouse brain profilei , antibody HPA057790
Hippocampal formation mean intensity 60.438
intensityi
FRONT BACK
Polymorph layer of the dentate gyrus 40.626
Molecular layer of the dentate gyrus 35.533
Granular dentate gyrus 28.227
CA1 - oriens layer 35.438
CA1 - pyramidal layer 27.029
CA1 - radiatum layer 36.120
CA2 - oriens layer 37.172
CA2 - pyramidal layer 31.833
CA2 - radiatum layer 34.396
CA3 - oriens layer 17.973
CA3 - pyramidal layer 18.606
CA3 - radiatum layer 20.955
Stratum lucidum 37.475
Lacunosum moleculare 31.555
Subiculum 60.438

HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 20.0
Sample id Sample description nTPM
Hippocampus
nTPM: 20.0
1855 Male, age 76, left hemisphere 23.4
1911 Female, age 85, right hemisphere 21.5
2529 Female, age 94, left hemisphere 21.4
1898 Male, age 80, left hemisphere 20.5
2148 Female, age 91, left hemisphere 19.1
2621 Female, age 67, right hemisphere 14.0
Dentate gyrus
nTPM: 16.6
2010 Male, age 76, both hemispheres 21.3
2528 Male, age 74, both hemispheres 21.0
2246 Female, age 85, both hemispheres 17.8
2530 Female, age 94, left hemisphere 15.4
1927 Female, age 91, both hemispheres 14.3
2531 Female, age 67, both hemispheres 10.0
Entorhinal gyrus
nTPM: 12.8
2117 Female, age 91, right hemisphere 21.8
1938 Female, age 85, left hemisphere 14.6
1787 Male, age 76, left hemisphere 12.8
2686 Male, age 75, right hemisphere 11.3
2764 Male, age 80, right hemisphere 8.6
2613 Female, age 94, left hemisphere 7.5
Hippocampus, CA1
nTPM: 17.9
2527 Male, age 74, both hemispheres 22.6
1873 Female, age 85, both hemispheres 20.3
2082 Female, age 91, right hemisphere 19.4
2045 Male, age 76, both hemispheres 15.9
2749 Male, age 80, left hemisphere 11.4
Hippocampus, CA2
nTPM: 16.4
2249 Male, age 74, both hemispheres 24.5
2113 Female, age 91, right hemisphere 20.3
1940 Female, age 85, left hemisphere 17.7
1963 Male, age 80, left hemisphere 13.5
2437 Female, age 94, left hemisphere 13.0
1892 Male, age 76, both hemispheres 9.5
Hippocampus, CA3
nTPM: 15.0
2436 Male, age 74, both hemispheres 20.7
1891 Female, age 85, both hemispheres 19.8
1867 Male, age 76, both hemispheres 14.6
2137 Male, age 80, left hemisphere 12.7
2861 Female, age 67, both hemispheres 11.4
2620 Female, age 94, left hemisphere 10.8
Parahippocampal cortex
nTPM: 14.0
2250 Female, age 67, right hemisphere 17.9
2692 Male, age 74, both hemispheres 17.6
2018 Male, age 76, both hemispheres 17.0
2245 Female, age 91, both hemispheres 14.9
1850 Male, age 80, both hemispheres 13.9
1990 Female, age 91, right hemisphere 13.6
1933 Female, age 85, both hemispheres 13.5
2693 Female, age 94, both hemispheres 11.7
2622 Female, age 67, right hemisphere 11.2
2532 Female, age 72, left hemisphere 8.5
Perirhinal gyrus
nTPM: 12.2
2521 Female, age 94, right hemisphere 14.1
1847 Female, age 91, left hemisphere 13.2
1841 Female, age 85, right hemisphere 12.2
1794 Male, age 80, right hemisphere 11.3
2848 Male, age 76, right hemisphere 10.2
Subiculum
nTPM: 17.1
2729 Female, age 91, right hemisphere 24.8
2042 Male, age 76, both hemispheres 18.6
2619 Male, age 74, both hemispheres 17.6
1901 Male, age 80, both hemispheres 14.4
1977 Female, age 85, both hemispheres 14.0
2438 Female, age 94, left hemisphere 13.4

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 11.0
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 11.0
Samples: 197

Max nTPM: 26.2
Min nTPM: 3.9
Std nTPM: 4.0
Median nTPM: 10.3
GTEX-13OW8-0011-R1a-SM-5L3HI 60-69 years, male 26.2
GTEX-12ZZX-0011-R1a-SM-5EQ6B 40-49 years, female 23.7
GTEX-11ZVC-0011-R1b-SM-5BC6M 50-59 years, female 23.6
GTEX-1F6IF-0011-R1b-SM-9WG78 60-69 years, male 22.5
GTEX-13OVJ-0011-R1b-SM-5L3I6 50-59 years, female 21.5
GTEX-QVUS-0011-R1A-SM-3GAD2 60-69 years, female 21.0
GTEX-PWO3-0011-R1A-SM-2I5EW 60-69 years, female 20.7
GTEX-1A32A-0011-R1a-SM-7P8SQ 50-59 years, female 19.4
GTEX-13NYS-0011-R1b-SM-5MR55 60-69 years, male 19.1
GTEX-QDT8-0011-R1A-SM-32PKS 30-39 years, female 18.9
GTEX-NPJ8-0011-R1a-SM-33HCB 40-49 years, male 18.3
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 46.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 46.1
FF:10153-102I9 76 years, female 46.5
FF:10169-103B7 60 years, female 45.6

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 35.7
Pig sample Sample description nTPM
Subiculum
nTPM: 32.3
Samples: 4

Max nTPM: 37.0
Min nTPM: 27.9
Sample A Female 37.0
Sample B Female 32.1
Sample C Male 32.0
Sample D Male 27.9
Dorsal hippocampus
nTPM: 35.7
Samples: 4

Max nTPM: 56.6
Min nTPM: 24.2
Sample A Female 56.6
Sample B Female 27.5
Sample C Male 34.6
Sample D Male 24.2
Entorhinal cortex
nTPM: 23.5
Samples: 4

Max nTPM: 26.2
Min nTPM: 21.7
Sample A Female 22.0
Sample B Female 23.9
Sample C Male 26.2
Sample D Male 21.7
Ventral hippocampus
nTPM: 33.1
Samples: 4

Max nTPM: 34.8
Min nTPM: 29.9
Sample A Female 34.5
Sample B Female 33.1
Sample C Male 34.8
Sample D Male 29.9

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 60.2
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 60.2
Samples: 4

Max nTPM: 64.9
Min nTPM: 57.8
Sample A Male 58.3
Sample B Male 57.8
Sample C Female 64.9
Sample D Female 59.8
Hippocampal formation
nTPM: 55.7
Samples: 4

Max nTPM: 60.5
Min nTPM: 49.9
Sample A Male 54.9
Sample B Male 49.9
Sample C Female 60.5
Sample D Female 57.4

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 1.5
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 1.5
72080065 Antisense, RP_051017_03_C02, Mouse strain C57BL/6J (56 days, male) 2.2
68920656 Antisense, RP_050303_01_A04, Mouse strain C57BL/6J (56 days, male) 1.2
70795772 Antisense, RP_050712_01_H12, Mouse strain C57BL/6J (56 days, male) 1.0
73512194 Antisense, RP_050712_01_H12, Mouse strain C57BL/6J (56 days, male) 0.5

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