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A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Average nTPM
15.6
GTEx sample id
Sample description
nTPM
Brain - Amygdala Average nTPM: 15.6
Samples: 152
Max nTPM: 34.6
Min nTPM: 5.7
Std nTPM: 5.0
Median nTPM: 15.6
GTEX-11ZU8-0011-R4a-SM-5BC6Y
60-69 years, male
34.6
GTEX-11ZVC-0011-R4a-SM-5BC6Z
50-59 years, female
28.7
GTEX-13NYS-0011-R4b-SM-5MR3O
60-69 years, male
28.2
GTEX-12ZZW-0011-R4a-SM-5DUX9
50-59 years, male
26.8
GTEX-13OW5-0011-R4b-SM-5L3HS
60-69 years, male
26.7
GTEX-13OW8-0011-R4a-SM-9WG6V
60-69 years, male
24.6
GTEX-1JN6P-0011-R4a-SM-EZ6MS
60-69 years, male
24.1
GTEX-13PVQ-0011-R4a-SM-5O9CT
50-59 years, male
22.9
GTEX-1J1OQ-0011-R4a-SM-D4P2A
40-49 years, female
22.9
GTEX-13OVJ-0011-R4b-SM-5P9H5
50-59 years, female
22.8
GTEX-14JFF-0011-R4a-SM-5ZZV5
60-69 years, male
22.5
GTEX-NL4W-0011-R4a-SM-2I5GZ
50-59 years, male
22.4
GTEX-14BIM-0011-R4b-SM-5S2RK
60-69 years, female
22.2
GTEX-14PN4-0011-R4a-SM-686ZT
50-59 years, male
22.2
GTEX-13OW7-0011-R4b-SM-5O9CX
50-59 years, male
21.9
GTEX-14ABY-0011-R4b-SM-5S2VN
50-59 years, male
21.9
GTEX-NL3H-0011-R4a-SM-2I3GK
60-69 years, male
21.8
GTEX-1GN73-0011-R4b-SM-9QEIK
60-69 years, male
21.8
GTEX-13FLV-0011-R4a-SM-5LZYU
50-59 years, male
21.1
GTEX-13SLX-0011-R4a-SM-5O9BJ
50-59 years, female
21.1
GTEX-1GZ4I-0011-R4a-SM-9QEI9
50-59 years, male
21.1
GTEX-11TTK-0011-R4a-SM-DNZZU
60-69 years, female
20.8
GTEX-OHPN-0011-R4A-SM-2I5FD
60-69 years, female
20.4
GTEX-1C6VR-0011-R4b-SM-9QEGZ
60-69 years, male
20.3
GTEX-WHSE-0011-R4A-SM-3P5ZN
20-29 years, male
20.2
GTEX-ZAK1-0011-R4a-SM-6AJBK
50-59 years, female
20.2
GTEX-1F75A-0011-R4a-SM-ARL8J
50-59 years, male
20.2
GTEX-147GR-0011-R4a-SM-5S2V2
60-69 years, male
20.1
GTEX-T6MN-0011-R4A-SM-32QPG
50-59 years, male
20.1
GTEX-1LVAO-0011-R4a-SM-EXURO
60-69 years, male
20.1
GTEX-13NYB-0011-R4b-SM-9QEGJ
40-49 years, male
20.0
GTEX-139T8-0011-R4a-SM-5HL54
60-69 years, male
19.9
GTEX-1J8Q2-0011-R4a-SM-ADEHA
60-69 years, male
19.9
GTEX-15ER7-0011-R4a-SM-6M46S
20-29 years, female
19.8
GTEX-1F6IF-0011-R4b-SM-CKZNJ
60-69 years, male
19.8
GTEX-1EMGI-0011-R4b-SM-CJI2D
60-69 years, male
19.4
GTEX-1H3O1-0011-R4b-SM-A9SKE
60-69 years, male
19.3
GTEX-11NUK-0011-R4a-SM-DO12B
50-59 years, male
19.2
GTEX-1J8EW-0011-R4b-SM-ARU89
60-69 years, female
19.2
GTEX-13RTJ-0011-R4b-SM-5PNX1
60-69 years, male
19.1
GTEX-1H1ZS-0011-R4b-SM-CKZO7
70-79 years, male
19.1
GTEX-1445S-0011-R4a-SM-5PNWN
60-69 years, male
18.9
GTEX-16YQH-0011-R4a-SM-7EPGI
30-39 years, male
18.8
GTEX-1GMR8-0011-R4a-SM-9OSX1
50-59 years, female
18.6
GTEX-12WSA-0011-R4a-SM-57WB7
60-69 years, male
18.4
GTEX-15DDE-0011-R4b-SM-7KULI
50-59 years, female
18.3
GTEX-13X6J-0011-R4b-SM-5P9K4
50-59 years, male
18.2
GTEX-13OVL-0011-R4b-SM-5L3HV
50-59 years, male
18.0
GTEX-ZVZQ-0011-R4b-SM-57WCZ
60-69 years, female
18.0
GTEX-12WSH-0011-R4a-SM-5GU6K
50-59 years, male
17.9
GTEX-13SLW-0011-R4b-SM-5S2W2
70-79 years, male
17.9
GTEX-1LSVX-0011-R4b-SM-EXURP
60-69 years, male
17.7
GTEX-13OW6-0011-R4a-SM-5O9DX
50-59 years, male
17.4
GTEX-1EX96-0011-R4a-SM-ARU82
50-59 years, male
17.4
GTEX-NPJ8-0011-R4a-SM-2HML3
40-49 years, male
17.0
GTEX-RNOR-0011-R4A-SM-3GAD3
50-59 years, female
17.0
GTEX-ZE9C-0011-R4a-SM-4WKH6
60-69 years, male
17.0
GTEX-15DCD-0011-R4a-SM-69LPB
70-79 years, female
16.9
GTEX-1HB9E-0011-R4b-SM-ARZLS
50-59 years, male
16.9
GTEX-1CB4J-0011-R4b-SM-9WG5P
60-69 years, male
16.7
GTEX-N7MT-0011-R4a-SM-2I3G9
60-69 years, female
16.5
GTEX-QVJO-0011-R4A-SM-2S1QL
60-69 years, female
16.5
GTEX-1I1GR-0011-R4a-SM-CMKHC
60-69 years, male
16.5
GTEX-14JG1-0011-R4b-SM-62LEB
40-49 years, male
16.4
GTEX-13QIC-0011-R4a-SM-5PNX8
60-69 years, female
16.3
GTEX-QDT8-0011-R4A-SM-32PKM
30-39 years, female
16.2
GTEX-14JIY-0011-R4b-SM-5ZZV7
60-69 years, male
16.1
GTEX-14PQA-0011-R4b-SM-6AJBU
50-59 years, female
16.0
GTEX-T5JC-0011-R4A-SM-32PLT
20-29 years, male
16.0
GTEX-11ONC-0011-R4b-SM-DO93H
60-69 years, male
16.0
GTEX-13X6K-0011-R4b-SM-5P9HO
60-69 years, female
15.8
GTEX-12ZZZ-0011-R4b-SM-5DUV7
60-69 years, male
15.7
GTEX-13N1W-0011-R4a-SM-5MR52
70-79 years, male
15.7
GTEX-1H23P-0011-R4b-SM-CL54R
60-69 years, male
15.7
GTEX-13CZV-0011-R4b-SM-5J2NY
60-69 years, male
15.6
GTEX-QMR6-0011-R4A-SM-32PKU
50-59 years, male
15.6
GTEX-S7SE-0011-R4A-SM-2XCDB
50-59 years, male
15.6
GTEX-11PRG-0011-R4a-SM-DNZZR
50-59 years, male
15.4
GTEX-131YS-0011-R4a-SM-5DUVL
60-69 years, female
15.3
GTEX-1HBPI-0011-R4a-SM-CJI3K
50-59 years, male
15.3
GTEX-1N2DW-0011-R4b-SM-EZ6MD
50-59 years, male
15.2
GTEX-Y8DK-0011-R4A-SM-EXUR1
60-69 years, male
15.1
GTEX-1A3MX-0011-R4b-SM-7EWFK
60-69 years, male
15.0
GTEX-13O3O-0011-R4b-SM-5KM3F
60-69 years, female
14.9
GTEX-WVLH-0011-R4A-SM-3MJFS
50-59 years, male
14.7
GTEX-15DYW-0011-R4a-SM-6M46V
60-69 years, female
14.6
GTEX-1CB4G-0011-R4b-SM-CJI28
60-69 years, male
14.5
GTEX-17F97-0011-R4b-SM-7KFS2
50-59 years, male
14.4
GTEX-1399T-0011-R4b-SM-5DUVX
60-69 years, male
14.3
GTEX-145MI-0011-R4b-SM-5PNZH
60-69 years, female
14.1
GTEX-1F7RK-0011-R4b-SM-9QEI7
20-29 years, female
14.0
GTEX-P44H-0011-R4A-SM-2XCEW
40-49 years, male
13.9
GTEX-1B996-0011-R4b-SM-9OSVO
60-69 years, male
13.9
GTEX-15EO6-0011-R4a-SM-7KUKZ
50-59 years, male
13.7
GTEX-P44G-0011-R4A-SM-2I3FB
30-39 years, male
13.6
GTEX-1E1VI-0011-R4b-SM-9QEHV
50-59 years, male
13.5
GTEX-1GTWX-0011-R4a-SM-C1YQI
60-69 years, male
13.5
GTEX-13JVG-0011-R4a-SM-5MR4C
60-69 years, male
13.4
GTEX-1H1CY-0011-R4b-SM-CJI3G
60-69 years, female
13.4
GTEX-QVUS-0011-R4A-SM-3GAE7
60-69 years, female
13.1
GTEX-1313W-0011-R4b-SM-5KLZV
50-59 years, female
13.0
GTEX-13OVH-0011-R4a-SM-5KM3W
70-79 years, male
13.0
GTEX-145LS-0011-R4b-SM-5S2UT
60-69 years, female
13.0
GTEX-15CHQ-0011-R4a-SM-686ZX
60-69 years, male
13.0
GTEX-1N2EE-0011-R4a-SM-EXOII
60-69 years, male
13.0
GTEX-13VXU-0011-R4b-SM-5O9CI
50-59 years, male
12.5
GTEX-12WSD-0011-R4b-SM-5LZUA
60-69 years, female
12.4
GTEX-XLM4-0011-R4B-SM-4AT5C
60-69 years, male
12.4
GTEX-14PJM-0011-R4a-SM-5YYAS
50-59 years, female
12.1
GTEX-144GL-0011-R4a-SM-5PNUI
50-59 years, male
12.0
GTEX-NPJ7-0011-R4a-SM-2I3GJ
60-69 years, female
11.8
GTEX-13O3Q-0011-R4a-SM-5P9H2
50-59 years, male
11.7
GTEX-YFC4-0011-R4a-SM-4RGLQ
40-49 years, female
11.7
GTEX-12WSF-0011-R4b-SM-5HL88
70-79 years, male
11.6
GTEX-1JJEA-0011-R4a-SM-EXUTC
60-69 years, male
11.6
GTEX-131XH-0011-R4b-SM-5DUWB
50-59 years, male
11.4
GTEX-1H2FU-0011-R4a-SM-CL551
60-69 years, female
11.0
GTEX-17HG3-0011-R4a-SM-7IGLL
30-39 years, female
10.9
GTEX-13112-0011-R4b-SM-5DUXL
50-59 years, male
10.8
GTEX-14E7W-0011-R4b-SM-62LEA
70-79 years, male
10.7
GTEX-1JMQJ-0011-R4b-SM-EXUT8
50-59 years, male
10.7
GTEX-13N2G-0011-R4b-SM-5MR54
60-69 years, male
10.6
GTEX-14DAQ-0011-R4a-SM-5YYAI
60-69 years, female
10.6
GTEX-UTHO-0011-R4A-SM-3GIJP
60-69 years, male
10.6
GTEX-1H1DG-0011-R4a-SM-CE6RQ
70-79 years, male
10.6
GTEX-R55E-0011-R4A-SM-2TC5H
20-29 years, male
10.3
GTEX-1HBPH-0011-R4a-SM-A96RX
40-49 years, female
10.3
GTEX-1IY9M-0011-R4a-SM-C1YQ2
60-69 years, male
10.3
GTEX-1H3NZ-0011-R4a-SM-CL54T
60-69 years, male
10.0
GTEX-TSE9-0011-R4A-SM-3DB7H
60-69 years, female
9.9
GTEX-X4EP-0011-R4B-SM-3P627
60-69 years, female
9.8
GTEX-17EVP-0011-R4a-SM-79OML
40-49 years, male
9.6
GTEX-1B8L1-0011-R4a-SM-7EWFJ
60-69 years, male
9.6
GTEX-Q2AG-0011-R4A-SM-2HMKA
40-49 years, female
9.6
GTEX-X4XX-0011-R4B-SM-46MWL
60-69 years, male
9.6
GTEX-13X6I-0011-R4b-SM-5PNU9
60-69 years, male
9.5
GTEX-1GF9W-0011-R4a-SM-CE6RH
60-69 years, male
9.5
GTEX-1HFI6-0011-R4b-SM-A96RT
40-49 years, male
9.5
GTEX-15SHU-0011-R4b-SM-7IGLC
40-49 years, female
9.4
GTEX-1C6WA-0011-R4a-SM-9QEH2
60-69 years, male
9.3
GTEX-14ASI-0011-R4a-SM-69LQ4
60-69 years, male
9.2
GTEX-1ICLZ-0011-R4a-SM-CMKHL
60-69 years, male
9.2
GTEX-N7MS-0011-R4a-SM-2HMKW
60-69 years, male
9.1
GTEX-1F48J-0011-R4b-SM-9OSVX
50-59 years, female
8.8
GTEX-17EVQ-0011-R4b-SM-7LT94
70-79 years, male
8.1
GTEX-18464-0011-R4a-SM-7LG6T
50-59 years, male
7.7
GTEX-1AX9I-0011-R4b-SM-7EPIB
60-69 years, male
7.6
GTEX-183WM-0011-R4a-SM-7LG6S
70-79 years, female
7.2
GTEX-ZAB4-0011-R4a-SM-4SOKB
40-49 years, male
7.1
GTEX-WZTO-0011-R4A-SM-3NMC7
40-49 years, male
6.5
GTEX-X585-0011-R4B-SM-46MVH
50-59 years, male
6.4
GTEX-1HCU6-0011-R4b-SM-ARU74
60-69 years, female
5.7
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AMYGDALA - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Average nTPM
57.6
Mouse sample
Sample description
nTPM
Amygdala nTPM: 57.6
Samples: 4
Max nTPM: 64.0
Min nTPM: 51.1
Sample A
Male
56.3
Sample B
Male
51.1
Sample C
Female
64.0
Sample D
Female
59.1
AMYGDALA - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
The Human Protein Atlas project is funded
