MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:108.1 nTPM
HPA Brain:102.5 nTPM
GTEx:108.1 nTPM
FANTOM5:12.9 Scaled Tags Per Million
Pig:9.3 nTPM
Mouse:4.5 nTPM
Allen mouse:0.1 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 102.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 96.9
2586 Male, age 75, left hemisphere 176.9
2828 Female, age 72, unknown 128.0
1870 Female, age 42, unknown 94.5
2019 Male, age 18, unknown 86.4
2219 Male, age 76, both hemispheres 84.8
2411 Female, age 72, unknown 82.9
1833 Male, age 53, unknown 80.8
2666 Male, age 74, left hemisphere 78.7
1827 Male, age 72, unknown 78.3
1830 Male, age 51, unknown 78.0
Dorsal raphe nucleus
nTPM: 97.2
2016 Female, age 72, unknown 123.5
2047 Male, age 72, unknown 100.1
2298 Female, age 72, unknown 94.8
1828 Male, age 53, unknown 89.5
2750 Male, age 76, both hemispheres 78.1
Inferior colliculus
nTPM: 70.3
1848 Female, age 42, unknown 80.7
2849 Male, age 72, unknown 71.2
1890 Male, age 53, unknown 68.7
2097 Female, age 72, unknown 60.6
Median raphe nucleus
nTPM: 81.0
2220 Male, age 76, midline 81.0
Periaquaductal grey, anterior
nTPM: 102.3
2502 Female, age 75, unknown 114.6
1795 Male, age 51, unknown 108.5
1947 Male, age 18, unknown 83.7
Periaquaductal grey, dorsal
nTPM: 85.2
1840 Male, age 53, unknown 96.7
2850 Male, age 76, both hemispheres 82.2
1831 Male, age 72, unknown 81.4
2464 Female, age 72, unknown 80.6
Periaquaductal grey, lateral
nTPM: 89.1
2053 Male, age 18, unknown 107.1
2140 Male, age 76, both hemispheres 81.0
2272 Male, age 74, both hemispheres 79.1
Pretectal area
nTPM: 92.5
2407 Male, age 75, both hemispheres 134.0
2273 Male, age 74, both hemispheres 123.8
2667 Female, age 75, unknown 98.9
2224 Female, age 72, unknown 94.9
2825 Male, age 18, unknown 94.3
1815 Male, age 53, unknown 89.5
2007 Male, age 72, unknown 82.4
1944 Female, age 72, unknown 78.3
1816 Male, age 51, unknown 77.8
1817 Female, age 42, unknown 76.2
2316 Male, age 76, right hemisphere 67.7
Red nucleus
nTPM: 81.0
2503 Female, age 72, unknown 98.4
2769 Male, age 72, unknown 95.1
2227 Male, age 72, unknown 93.0
2584 Male, age 75, left hemisphere 89.4
2588 Male, age 74, left hemisphere 86.4
1954 Female, age 42, unknown 82.7
1904 Male, age 53, unknown 82.6
2785 Male, age 18, unknown 81.9
1821 Female, age 72, unknown 78.9
1865 Male, age 51, unknown 75.3
2725 Female, age 75, unknown 57.0
2823 Male, age 76, right hemisphere 51.7
Substantia nigra
nTPM: 95.5
2583 Male, age 75, right hemisphere 115.6
2699 Male, age 18, unknown 105.8
1851 Male, age 51, unknown 104.2
1916 Female, age 42, unknown 102.5
2590 Female, age 75, unknown 99.9
2665 Male, age 74, both hemispheres 97.5
1941 Male, age 53, unknown 93.2
1889 Female, age 72, unknown 82.6
2241 Male, age 72, unknown 79.5
2409 Female, age 72, unknown 74.4
Superior colliculus
nTPM: 102.5
2664 Male, age 75, both hemispheres 200.0
1995 Male, age 72, unknown 108.6
2668 Female, age 75, unknown 105.2
1796 Male, age 53, unknown 100.7
1839 Male, age 51, unknown 99.6
1913 Female, age 42, unknown 96.8
2587 Male, age 74, left hemisphere 88.9
2261 Male, age 18, unknown 88.4
2087 Female, age 72, unknown 77.5
1895 Male, age 76, right hemisphere 59.5
Ventral tegmental area
nTPM: 95.1
1942 Male, age 51, unknown 116.1
2021 Male, age 53, unknown 101.1
1915 Female, age 42, unknown 99.0
2223 Female, age 72, unknown 93.2
2410 Female, age 72, unknown 87.5
2218 Male, age 76, both hemispheres 73.9

MIDBRAIN - GTEx RNA-seqi
Average nTPM 108.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 108.1
Samples: 139

Max nTPM: 381.1
Min nTPM: 39.4
Std nTPM: 45.9
Median nTPM: 99.6
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 381.1
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 232.2
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 227.4
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 221.9
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 201.1
GTEX-1C6VR-0011-R2a-SM-7RHGZ 60-69 years, male 195.6
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 190.8
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 189.4
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 184.7
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 184.3
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 179.9
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 12.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 12.9
FF:10158-103A5 76 years, female 12.9

MIDBRAIN - Pig RNA-seqi
Average nTPM 9.3
Pig sample Sample description nTPM
Substantia nigra
nTPM: 6.8
Samples: 4

Max nTPM: 8.2
Min nTPM: 4.9
Sample A Female 7.8
Sample B Female 8.2
Sample C Male 6.2
Sample D Male 4.9
Midbrain
nTPM: 6.2
Samples: 4

Max nTPM: 8.5
Min nTPM: 5.0
Sample A Female 5.0
Sample B Female 5.1
Sample C Male 6.3
Sample D Male 8.5
Periaqueductal gray
nTPM: 5.3
Samples: 3

Max nTPM: 5.7
Min nTPM: 5.0
Sample B Female 5.2
Sample C Male 5.7
Sample D Male 5.0
Superior colliculi
nTPM: 9.3
Samples: 4

Max nTPM: 14.7
Min nTPM: 5.7
Sample A Female 10.6
Sample B Female 14.7
Sample C Male 5.7
Sample D Male 6.3

MIDBRAIN - Mouse RNA-seqi
Average nTPM 4.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 4.5
Samples: 4

Max nTPM: 5.1
Min nTPM: 4.1
Sample A Male 5.1
Sample B Male 4.5
Sample C Female 4.1
Sample D Female 4.2

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.1
75990861 Antisense, RP_060608_01_F10, Mouse strain C57BL/6J (56 days, male) 0.1

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