MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:5.5 nTPM
HPA Brain:25.7 nTPM
GTEx:5.5 nTPM
FANTOM5:62.5 Scaled Tags Per Million
Pig:16.7 nTPM
Mouse:9.4 nTPM
Allen mouse:0.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 25.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 24.7
2219 Male, age 76, both hemispheres 27.4
2666 Male, age 74, left hemisphere 27.2
2586 Male, age 75, left hemisphere 26.7
1830 Male, age 51, unknown 25.3
2019 Male, age 18, unknown 25.1
1870 Female, age 42, unknown 23.4
2411 Female, age 72, unknown 23.2
2828 Female, age 72, unknown 23.0
1833 Male, age 53, unknown 22.8
1827 Male, age 72, unknown 22.6
Dorsal raphe nucleus
nTPM: 25.6
2016 Female, age 72, unknown 26.7
2298 Female, age 72, unknown 26.7
2750 Male, age 76, both hemispheres 25.0
1828 Male, age 53, unknown 24.8
2047 Male, age 72, unknown 24.7
Inferior colliculus
nTPM: 21.4
2849 Male, age 72, unknown 25.7
1848 Female, age 42, unknown 21.9
1890 Male, age 53, unknown 20.2
2097 Female, age 72, unknown 17.6
Median raphe nucleus
nTPM: 23.7
2220 Male, age 76, midline 23.7
Periaquaductal grey, anterior
nTPM: 24.4
2502 Female, age 75, unknown 26.4
1795 Male, age 51, unknown 25.2
1947 Male, age 18, unknown 21.6
Periaquaductal grey, dorsal
nTPM: 23.5
1840 Male, age 53, unknown 24.2
1831 Male, age 72, unknown 23.7
2850 Male, age 76, both hemispheres 23.5
2464 Female, age 72, unknown 22.7
Periaquaductal grey, lateral
nTPM: 25.7
2272 Male, age 74, both hemispheres 28.1
2053 Male, age 18, unknown 24.7
2140 Male, age 76, both hemispheres 24.3
Pretectal area
nTPM: 23.0
2407 Male, age 75, both hemispheres 26.2
2273 Male, age 74, both hemispheres 26.1
2316 Male, age 76, right hemisphere 25.5
2224 Female, age 72, unknown 23.6
1944 Female, age 72, unknown 23.2
2007 Male, age 72, unknown 23.1
2825 Male, age 18, unknown 22.5
1817 Female, age 42, unknown 22.4
2667 Female, age 75, unknown 20.8
1815 Male, age 53, unknown 20.6
1816 Male, age 51, unknown 19.5
Red nucleus
nTPM: 23.2
2584 Male, age 75, left hemisphere 27.7
2785 Male, age 18, unknown 27.1
1904 Male, age 53, unknown 25.8
2769 Male, age 72, unknown 25.1
2725 Female, age 75, unknown 24.2
2227 Male, age 72, unknown 24.1
2823 Male, age 76, right hemisphere 22.3
1865 Male, age 51, unknown 22.2
2503 Female, age 72, unknown 21.2
1954 Female, age 42, unknown 20.5
2588 Male, age 74, left hemisphere 20.5
1821 Female, age 72, unknown 18.3
Substantia nigra
nTPM: 23.7
2409 Female, age 72, unknown 28.7
2665 Male, age 74, both hemispheres 26.5
2699 Male, age 18, unknown 26.1
2583 Male, age 75, right hemisphere 25.0
1851 Male, age 51, unknown 23.7
1941 Male, age 53, unknown 23.7
2590 Female, age 75, unknown 22.7
1889 Female, age 72, unknown 20.5
1916 Female, age 42, unknown 20.1
2241 Male, age 72, unknown 19.6
Superior colliculus
nTPM: 23.8
2664 Male, age 75, both hemispheres 26.5
2587 Male, age 74, left hemisphere 26.1
1839 Male, age 51, unknown 25.0
1913 Female, age 42, unknown 24.5
1796 Male, age 53, unknown 23.9
2668 Female, age 75, unknown 23.8
1995 Male, age 72, unknown 22.8
2087 Female, age 72, unknown 22.1
1895 Male, age 76, right hemisphere 21.9
2261 Male, age 18, unknown 21.4
Ventral tegmental area
nTPM: 22.3
2021 Male, age 53, unknown 24.7
1942 Male, age 51, unknown 24.1
1915 Female, age 42, unknown 22.2
2223 Female, age 72, unknown 21.4
2410 Female, age 72, unknown 21.4
2218 Male, age 76, both hemispheres 19.8

MIDBRAIN - GTEx RNA-seqi
Average nTPM 5.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 5.5
Samples: 139

Max nTPM: 18.3
Min nTPM: 2.5
Std nTPM: 2.2
Median nTPM: 5.0
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 18.3
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 16.2
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 16.0
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 11.1
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 9.6
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 9.4
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 9.4
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 9.1
GTEX-X585-0011-R2B-SM-46MVF 50-59 years, male 9.1
GTEX-NPJ8-0011-R2a-SM-2TC6M 40-49 years, male 8.9
GTEX-12WSF-0011-R2a-SM-5DUVU 70-79 years, male 8.7
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 62.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 62.5
FF:10158-103A5 76 years, female 62.5

MIDBRAIN - Pig RNA-seqi
Average nTPM 16.7
Pig sample Sample description nTPM
Substantia nigra
nTPM: 13.4
Samples: 4

Max nTPM: 15.4
Min nTPM: 12.0
Sample A Female 15.4
Sample B Female 13.1
Sample C Male 12.0
Sample D Male 13.2
Midbrain
nTPM: 15.1
Samples: 4

Max nTPM: 18.6
Min nTPM: 11.6
Sample A Female 15.5
Sample B Female 14.7
Sample C Male 11.6
Sample D Male 18.6
Periaqueductal gray
nTPM: 16.7
Samples: 3

Max nTPM: 17.5
Min nTPM: 15.6
Sample B Female 15.6
Sample C Male 16.9
Sample D Male 17.5
Superior colliculi
nTPM: 14.9
Samples: 4

Max nTPM: 17.7
Min nTPM: 11.4
Sample A Female 17.7
Sample B Female 13.0
Sample C Male 11.4
Sample D Male 17.3

MIDBRAIN - Mouse RNA-seqi
Average nTPM 9.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 9.4
Samples: 4

Max nTPM: 12.4
Min nTPM: 7.3
Sample A Male 7.3
Sample B Male 10.1
Sample C Female 12.4
Sample D Female 7.9

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.0
68196962 Antisense, RP_040922_01_C09, Mouse strain C57BL/6J (56 days, male) 0.0

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