MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:7.1 nTPM
HPA Brain:16.5 nTPM
GTEx:7.1 nTPM
FANTOM5:16.4 Scaled Tags Per Million
Pig:7.4 nTPM
Mouse:7.0 nTPM
Allen mouse:0.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 16.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 12.7
1830 Male, age 51, unknown 18.7
2019 Male, age 18, unknown 16.3
2411 Female, age 72, unknown 16.3
1870 Female, age 42, unknown 15.2
1833 Male, age 53, unknown 15.1
2666 Male, age 74, left hemisphere 11.0
2828 Female, age 72, unknown 10.3
2586 Male, age 75, left hemisphere 9.2
1827 Male, age 72, unknown 7.9
2219 Male, age 76, both hemispheres 7.0
Dorsal raphe nucleus
nTPM: 7.5
2750 Male, age 76, both hemispheres 13.8
1828 Male, age 53, unknown 8.1
2016 Female, age 72, unknown 7.0
2047 Male, age 72, unknown 5.3
2298 Female, age 72, unknown 3.4
Inferior colliculus
nTPM: 7.7
1890 Male, age 53, unknown 10.0
1848 Female, age 42, unknown 7.8
2849 Male, age 72, unknown 6.8
2097 Female, age 72, unknown 6.1
Median raphe nucleus
nTPM: 7.9
2220 Male, age 76, midline 7.9
Periaquaductal grey, anterior
nTPM: 6.7
1947 Male, age 18, unknown 8.8
2502 Female, age 75, unknown 6.7
1795 Male, age 51, unknown 4.6
Periaquaductal grey, dorsal
nTPM: 5.7
2464 Female, age 72, unknown 8.1
2850 Male, age 76, both hemispheres 7.2
1831 Male, age 72, unknown 5.4
1840 Male, age 53, unknown 1.9
Periaquaductal grey, lateral
nTPM: 7.3
2140 Male, age 76, both hemispheres 8.3
2053 Male, age 18, unknown 6.9
2272 Male, age 74, both hemispheres 6.6
Pretectal area
nTPM: 7.1
2316 Male, age 76, right hemisphere 11.0
1815 Male, age 53, unknown 10.2
2407 Male, age 75, both hemispheres 10.2
2007 Male, age 72, unknown 8.1
1817 Female, age 42, unknown 7.4
2825 Male, age 18, unknown 7.2
2273 Male, age 74, both hemispheres 5.4
2667 Female, age 75, unknown 5.3
2224 Female, age 72, unknown 5.0
1944 Female, age 72, unknown 4.3
1816 Male, age 51, unknown 3.5
Red nucleus
nTPM: 16.5
1865 Male, age 51, unknown 21.9
1821 Female, age 72, unknown 19.7
1904 Male, age 53, unknown 18.8
2769 Male, age 72, unknown 17.6
2227 Male, age 72, unknown 17.1
2785 Male, age 18, unknown 16.8
2823 Male, age 76, right hemisphere 16.5
2503 Female, age 72, unknown 15.0
2588 Male, age 74, left hemisphere 14.9
1954 Female, age 42, unknown 14.6
2725 Female, age 75, unknown 12.3
2584 Male, age 75, left hemisphere 12.2
Substantia nigra
nTPM: 8.2
2583 Male, age 75, right hemisphere 12.2
2590 Female, age 75, unknown 10.6
1851 Male, age 51, unknown 10.1
1889 Female, age 72, unknown 9.5
1941 Male, age 53, unknown 8.3
2409 Female, age 72, unknown 7.8
2699 Male, age 18, unknown 7.3
2241 Male, age 72, unknown 6.4
1916 Female, age 42, unknown 5.4
2665 Male, age 74, both hemispheres 4.5
Superior colliculus
nTPM: 9.3
1913 Female, age 42, unknown 16.2
1995 Male, age 72, unknown 15.5
2668 Female, age 75, unknown 10.4
2587 Male, age 74, left hemisphere 10.3
1839 Male, age 51, unknown 9.4
1895 Male, age 76, right hemisphere 8.9
1796 Male, age 53, unknown 6.7
2664 Male, age 75, both hemispheres 6.0
2087 Female, age 72, unknown 5.2
2261 Male, age 18, unknown 4.6
Ventral tegmental area
nTPM: 11.0
2223 Female, age 72, unknown 20.2
2410 Female, age 72, unknown 12.1
2218 Male, age 76, both hemispheres 8.9
1942 Male, age 51, unknown 8.8
2021 Male, age 53, unknown 8.5
1915 Female, age 42, unknown 7.4

MIDBRAIN - GTEx RNA-seqi
Average nTPM 7.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 7.1
Samples: 139

Max nTPM: 24.9
Min nTPM: 0.9
Std nTPM: 4.4
Median nTPM: 6.3
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 24.9
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 24.4
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 21.0
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 20.4
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 18.3
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 17.9
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 17.7
GTEX-1GTWX-0011-R2b-SM-ADEH5 60-69 years, male 15.4
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 13.9
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 13.9
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 13.3
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 16.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 16.4
FF:10158-103A5 76 years, female 16.4

MIDBRAIN - Pig RNA-seqi
Average nTPM 7.4
Pig sample Sample description nTPM
Substantia nigra
nTPM: 6.6
Samples: 4

Max nTPM: 11.1
Min nTPM: 3.6
Sample A Female 5.4
Sample B Female 3.6
Sample C Male 6.3
Sample D Male 11.1
Midbrain
nTPM: 7.4
Samples: 4

Max nTPM: 17.5
Min nTPM: 2.9
Sample A Female 17.5
Sample B Female 5.2
Sample C Male 4.0
Sample D Male 2.9
Periaqueductal gray
nTPM: 3.6
Samples: 3

Max nTPM: 4.3
Min nTPM: 2.6
Sample B Female 4.0
Sample C Male 2.6
Sample D Male 4.3
Superior colliculi
nTPM: 4.4
Samples: 4

Max nTPM: 6.0
Min nTPM: 2.6
Sample A Female 3.4
Sample B Female 2.6
Sample C Male 5.7
Sample D Male 6.0

MIDBRAIN - Mouse RNA-seqi
Average nTPM 7.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 7.0
Samples: 4

Max nTPM: 7.4
Min nTPM: 6.7
Sample A Male 6.7
Sample B Male 6.9
Sample C Female 6.9
Sample D Female 7.4

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.1
70717377 Antisense, RP_050419_02_A07, Mouse strain C57BL/6J (56 days, male) 0.1

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