MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:73.2 nTPM
HPA Brain:81.7 nTPM
GTEx:73.2 nTPM
FANTOM5:84.2 Scaled Tags Per Million
Pig:83.6 nTPM
Mouse:35.2 nTPM
Allen mouse:1.2 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 81.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 78.7
2666 Male, age 74, left hemisphere 135.0
2586 Male, age 75, left hemisphere 122.0
1827 Male, age 72, unknown 83.3
2828 Female, age 72, unknown 81.4
2411 Female, age 72, unknown 68.6
1870 Female, age 42, unknown 63.4
1833 Male, age 53, unknown 62.7
1830 Male, age 51, unknown 61.9
2019 Male, age 18, unknown 58.0
2219 Male, age 76, both hemispheres 50.5
Dorsal raphe nucleus
nTPM: 59.3
2047 Male, age 72, unknown 68.6
2750 Male, age 76, both hemispheres 67.6
1828 Male, age 53, unknown 64.0
2298 Female, age 72, unknown 51.1
2016 Female, age 72, unknown 45.2
Inferior colliculus
nTPM: 53.6
1848 Female, age 42, unknown 56.2
1890 Male, age 53, unknown 55.1
2849 Male, age 72, unknown 52.8
2097 Female, age 72, unknown 50.3
Median raphe nucleus
nTPM: 54.6
2220 Male, age 76, midline 54.6
Periaquaductal grey, anterior
nTPM: 81.7
1947 Male, age 18, unknown 104.9
1795 Male, age 51, unknown 80.9
2502 Female, age 75, unknown 59.4
Periaquaductal grey, dorsal
nTPM: 46.8
2464 Female, age 72, unknown 53.2
1831 Male, age 72, unknown 50.6
1840 Male, age 53, unknown 44.1
2850 Male, age 76, both hemispheres 39.5
Periaquaductal grey, lateral
nTPM: 42.0
2053 Male, age 18, unknown 50.3
2272 Male, age 74, both hemispheres 38.9
2140 Male, age 76, both hemispheres 36.9
Pretectal area
nTPM: 56.8
2007 Male, age 72, unknown 80.5
1816 Male, age 51, unknown 71.6
1944 Female, age 72, unknown 63.2
1815 Male, age 53, unknown 63.1
1817 Female, age 42, unknown 62.4
2825 Male, age 18, unknown 59.5
2316 Male, age 76, right hemisphere 54.6
2667 Female, age 75, unknown 54.5
2224 Female, age 72, unknown 49.0
2407 Male, age 75, both hemispheres 41.9
2273 Male, age 74, both hemispheres 24.6
Red nucleus
nTPM: 74.9
2588 Male, age 74, left hemisphere 139.3
2584 Male, age 75, left hemisphere 102.1
2725 Female, age 75, unknown 78.0
1821 Female, age 72, unknown 70.7
2823 Male, age 76, right hemisphere 70.6
2769 Male, age 72, unknown 70.1
1904 Male, age 53, unknown 67.5
2227 Male, age 72, unknown 64.9
1954 Female, age 42, unknown 62.7
1865 Male, age 51, unknown 60.8
2503 Female, age 72, unknown 57.4
2785 Male, age 18, unknown 54.2
Substantia nigra
nTPM: 75.7
1916 Female, age 42, unknown 108.3
2665 Male, age 74, both hemispheres 107.4
1851 Male, age 51, unknown 89.0
2583 Male, age 75, right hemisphere 74.5
1941 Male, age 53, unknown 72.8
1889 Female, age 72, unknown 68.2
2241 Male, age 72, unknown 62.8
2699 Male, age 18, unknown 62.2
2409 Female, age 72, unknown 56.3
2590 Female, age 75, unknown 55.4
Superior colliculus
nTPM: 62.4
2668 Female, age 75, unknown 99.7
1796 Male, age 53, unknown 71.2
2261 Male, age 18, unknown 70.9
2587 Male, age 74, left hemisphere 66.2
2087 Female, age 72, unknown 64.4
2664 Male, age 75, both hemispheres 58.4
1895 Male, age 76, right hemisphere 58.2
1839 Male, age 51, unknown 57.9
1995 Male, age 72, unknown 39.4
1913 Female, age 42, unknown 38.1
Ventral tegmental area
nTPM: 65.4
1915 Female, age 42, unknown 78.9
2410 Female, age 72, unknown 69.4
2218 Male, age 76, both hemispheres 68.7
1942 Male, age 51, unknown 60.4
2021 Male, age 53, unknown 57.8
2223 Female, age 72, unknown 57.1

MIDBRAIN - GTEx RNA-seqi
Average nTPM 73.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 73.2
Samples: 139

Max nTPM: 192.9
Min nTPM: 24.2
Std nTPM: 31.2
Median nTPM: 66.7
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 192.9
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 182.9
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 175.5
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 159.5
GTEX-13OW8-0011-R2a-SM-5L3G2 60-69 years, male 150.6
GTEX-1IL2U-0011-R2a-SM-ARU6V 60-69 years, male 141.4
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 132.8
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 130.1
GTEX-18464-0011-R2a-SM-731AL 50-59 years, male 124.5
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 123.9
GTEX-XLM4-0011-R2B-SM-4AT5Z 60-69 years, male 122.1
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 84.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 84.2
FF:10158-103A5 76 years, female 84.2

MIDBRAIN - Pig RNA-seqi
Average nTPM 83.6
Pig sample Sample description nTPM
Substantia nigra
nTPM: 73.8
Samples: 4

Max nTPM: 98.9
Min nTPM: 48.4
Sample A Female 98.9
Sample B Female 66.8
Sample C Male 80.9
Sample D Male 48.4
Midbrain
nTPM: 65.5
Samples: 4

Max nTPM: 85.9
Min nTPM: 39.5
Sample A Female 39.5
Sample B Female 63.2
Sample C Male 85.9
Sample D Male 73.4
Periaqueductal gray
nTPM: 52.6
Samples: 3

Max nTPM: 64.7
Min nTPM: 39.2
Sample B Female 53.9
Sample C Male 64.7
Sample D Male 39.2
Superior colliculi
nTPM: 83.6
Samples: 4

Max nTPM: 106.4
Min nTPM: 49.3
Sample A Female 106.4
Sample B Female 49.3
Sample C Male 101.8
Sample D Male 77.0

MIDBRAIN - Mouse RNA-seqi
Average nTPM 35.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 35.3
Samples: 4

Max nTPM: 42.5
Min nTPM: 30.6
Sample A Male 42.5
Sample B Male 31.6
Sample C Female 30.6
Sample D Female 36.3

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 1.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.2
532705 Antisense, RP_040825_01_F04, Mouse strain C57BL/6J (56 days, male) 1.2

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