MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:26.0 nTPM
HPA Brain:72.7 nTPM
GTEx:26.0 nTPM
FANTOM5:25.1 Scaled Tags Per Million
Pig:51.2 nTPM
Mouse:24.2 nTPM
Allen mouse:3.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 72.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 43.8
2219 Male, age 76, both hemispheres 97.7
2019 Male, age 18, unknown 55.8
2586 Male, age 75, left hemisphere 51.5
1827 Male, age 72, unknown 45.8
2666 Male, age 74, left hemisphere 40.6
1870 Female, age 42, unknown 37.5
1830 Male, age 51, unknown 31.6
2828 Female, age 72, unknown 31.2
2411 Female, age 72, unknown 23.6
1833 Male, age 53, unknown 22.4
Dorsal raphe nucleus
nTPM: 20.3
2016 Female, age 72, unknown 23.0
1828 Male, age 53, unknown 22.3
2298 Female, age 72, unknown 20.0
2047 Male, age 72, unknown 19.5
2750 Male, age 76, both hemispheres 16.7
Inferior colliculus
nTPM: 72.7
2097 Female, age 72, unknown 125.3
1890 Male, age 53, unknown 75.1
2849 Male, age 72, unknown 47.3
1848 Female, age 42, unknown 43.0
Median raphe nucleus
nTPM: 13.5
2220 Male, age 76, midline 13.5
Periaquaductal grey, anterior
nTPM: 34.5
1795 Male, age 51, unknown 37.7
2502 Female, age 75, unknown 33.7
1947 Male, age 18, unknown 32.2
Periaquaductal grey, dorsal
nTPM: 24.4
2464 Female, age 72, unknown 35.7
1831 Male, age 72, unknown 23.7
1840 Male, age 53, unknown 23.0
2850 Male, age 76, both hemispheres 15.5
Periaquaductal grey, lateral
nTPM: 24.3
2272 Male, age 74, both hemispheres 28.1
2053 Male, age 18, unknown 26.6
2140 Male, age 76, both hemispheres 18.3
Pretectal area
nTPM: 44.9
2007 Male, age 72, unknown 77.2
1817 Female, age 42, unknown 63.9
2407 Male, age 75, both hemispheres 49.9
1944 Female, age 72, unknown 48.0
1815 Male, age 53, unknown 41.6
2316 Male, age 76, right hemisphere 41.6
1816 Male, age 51, unknown 41.3
2825 Male, age 18, unknown 36.3
2667 Female, age 75, unknown 35.7
2224 Female, age 72, unknown 34.9
2273 Male, age 74, both hemispheres 23.9
Red nucleus
nTPM: 63.7
1954 Female, age 42, unknown 90.2
1821 Female, age 72, unknown 79.8
1865 Male, age 51, unknown 76.3
2227 Male, age 72, unknown 68.8
1904 Male, age 53, unknown 68.6
2769 Male, age 72, unknown 66.2
2823 Male, age 76, right hemisphere 59.3
2588 Male, age 74, left hemisphere 57.1
2785 Male, age 18, unknown 53.8
2503 Female, age 72, unknown 52.1
2584 Male, age 75, left hemisphere 48.5
2725 Female, age 75, unknown 43.8
Substantia nigra
nTPM: 43.6
2699 Male, age 18, unknown 60.5
2665 Male, age 74, both hemispheres 55.4
2409 Female, age 72, unknown 52.7
1941 Male, age 53, unknown 51.2
1851 Male, age 51, unknown 49.3
1889 Female, age 72, unknown 42.8
2583 Male, age 75, right hemisphere 41.3
2590 Female, age 75, unknown 34.0
2241 Male, age 72, unknown 31.7
1916 Female, age 42, unknown 17.0
Superior colliculus
nTPM: 40.9
2668 Female, age 75, unknown 81.5
1895 Male, age 76, right hemisphere 52.0
1839 Male, age 51, unknown 42.9
1796 Male, age 53, unknown 41.9
2664 Male, age 75, both hemispheres 40.6
2587 Male, age 74, left hemisphere 37.7
2087 Female, age 72, unknown 37.2
1995 Male, age 72, unknown 29.6
2261 Male, age 18, unknown 24.8
1913 Female, age 42, unknown 21.1
Ventral tegmental area
nTPM: 34.6
1915 Female, age 42, unknown 52.2
2223 Female, age 72, unknown 50.9
2021 Male, age 53, unknown 32.5
2410 Female, age 72, unknown 30.3
1942 Male, age 51, unknown 23.6
2218 Male, age 76, both hemispheres 18.2

MIDBRAIN - GTEx RNA-seqi
Average nTPM 26.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 26.0
Samples: 139

Max nTPM: 542.2
Min nTPM: 1.7
Std nTPM: 54.2
Median nTPM: 11.8
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 542.2
GTEX-1EU9M-0011-R2b-SM-9QEH7 60-69 years, male 242.4
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 171.1
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 146.1
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 128.3
GTEX-1HR98-0011-R2a-SM-ARL7A 60-69 years, male 106.1
GTEX-1C6VR-0011-R2a-SM-7RHGZ 60-69 years, male 89.6
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 82.2
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 68.6
GTEX-1E1VI-0011-R2a-SM-9QEGS 50-59 years, male 55.4
GTEX-1F6IF-0011-R2b-SM-9QEHB 60-69 years, male 54.9
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 25.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 25.1
FF:10158-103A5 76 years, female 25.1

MIDBRAIN - Pig RNA-seqi
Average nTPM 51.2
Pig sample Sample description nTPM
Substantia nigra
nTPM: 41.9
Samples: 4

Max nTPM: 52.4
Min nTPM: 30.1
Sample A Female 30.1
Sample B Female 49.9
Sample C Male 52.4
Sample D Male 35.3
Midbrain
nTPM: 51.2
Samples: 4

Max nTPM: 110.5
Min nTPM: 19.1
Sample A Female 19.1
Sample B Female 22.1
Sample C Male 53.0
Sample D Male 110.5
Periaqueductal gray
nTPM: 15.3
Samples: 3

Max nTPM: 20.7
Min nTPM: 12.4
Sample B Female 20.7
Sample C Male 12.4
Sample D Male 12.9
Superior colliculi
nTPM: 42.2
Samples: 4

Max nTPM: 53.6
Min nTPM: 27.4
Sample A Female 51.5
Sample B Female 27.4
Sample C Male 53.6
Sample D Male 36.4

MIDBRAIN - Mouse RNA-seqi
Average nTPM 24.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 24.2
Samples: 4

Max nTPM: 28.0
Min nTPM: 21.0
Sample A Male 21.0
Sample B Male 24.0
Sample C Female 28.0
Sample D Female 23.8

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 3.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 3.0
79567762 Antisense, RP_071204_02_A07, Mouse strain C57BL/6J (56 days, male) 5.9
79677353 Antisense, RP_071204_02_A07, Mouse strain C57BL/6J (56 days, male) 3.9
71587781 Antisense, RP_050725_02_D09, Mouse strain C57BL/6J (56 days, male) 2.0
68148752 Antisense, RP_041116_02_B04, Mouse strain C57BL/6J (56 days, male) 1.2

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