MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:16.0 nTPM
HPA Brain:26.4 nTPM
GTEx:16.0 nTPM
FANTOM5:31.1 Scaled Tags Per Million
Pig:50.7 nTPM
Mouse:47.1 nTPM
Allen mouse:0.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 26.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 23.8
2411 Female, age 72, unknown 25.0
2019 Male, age 18, unknown 24.8
1827 Male, age 72, unknown 24.7
2828 Female, age 72, unknown 24.5
2219 Male, age 76, both hemispheres 24.3
2666 Male, age 74, left hemisphere 24.3
1830 Male, age 51, unknown 24.1
1870 Female, age 42, unknown 22.9
1833 Male, age 53, unknown 22.3
2586 Male, age 75, left hemisphere 20.8
Dorsal raphe nucleus
nTPM: 23.8
2750 Male, age 76, both hemispheres 26.4
2047 Male, age 72, unknown 25.3
2298 Female, age 72, unknown 24.6
1828 Male, age 53, unknown 22.5
2016 Female, age 72, unknown 20.4
Inferior colliculus
nTPM: 23.5
1890 Male, age 53, unknown 26.3
2097 Female, age 72, unknown 25.2
1848 Female, age 42, unknown 22.4
2849 Male, age 72, unknown 20.2
Median raphe nucleus
nTPM: 26.4
2220 Male, age 76, midline 26.4
Periaquaductal grey, anterior
nTPM: 21.2
1947 Male, age 18, unknown 22.0
2502 Female, age 75, unknown 21.4
1795 Male, age 51, unknown 20.2
Periaquaductal grey, dorsal
nTPM: 23.7
2850 Male, age 76, both hemispheres 25.3
1831 Male, age 72, unknown 24.8
2464 Female, age 72, unknown 22.9
1840 Male, age 53, unknown 22.0
Periaquaductal grey, lateral
nTPM: 23.8
2272 Male, age 74, both hemispheres 26.1
2053 Male, age 18, unknown 24.4
2140 Male, age 76, both hemispheres 21.0
Pretectal area
nTPM: 25.5
2007 Male, age 72, unknown 29.6
1944 Female, age 72, unknown 29.1
1816 Male, age 51, unknown 28.1
2316 Male, age 76, right hemisphere 25.7
1815 Male, age 53, unknown 25.3
2273 Male, age 74, both hemispheres 25.3
1817 Female, age 42, unknown 24.7
2407 Male, age 75, both hemispheres 24.2
2667 Female, age 75, unknown 23.9
2224 Female, age 72, unknown 23.0
2825 Male, age 18, unknown 21.3
Red nucleus
nTPM: 24.5
1865 Male, age 51, unknown 28.3
2588 Male, age 74, left hemisphere 26.3
2503 Female, age 72, unknown 26.0
1821 Female, age 72, unknown 25.6
1904 Male, age 53, unknown 24.6
1954 Female, age 42, unknown 24.5
2227 Male, age 72, unknown 24.3
2725 Female, age 75, unknown 23.6
2823 Male, age 76, right hemisphere 23.5
2785 Male, age 18, unknown 23.4
2769 Male, age 72, unknown 22.0
2584 Male, age 75, left hemisphere 21.7
Substantia nigra
nTPM: 22.2
1941 Male, age 53, unknown 24.9
1916 Female, age 42, unknown 24.6
2590 Female, age 75, unknown 24.3
2583 Male, age 75, right hemisphere 24.2
1889 Female, age 72, unknown 23.5
1851 Male, age 51, unknown 23.4
2699 Male, age 18, unknown 22.1
2241 Male, age 72, unknown 21.1
2409 Female, age 72, unknown 17.6
2665 Male, age 74, both hemispheres 16.1
Superior colliculus
nTPM: 24.1
2261 Male, age 18, unknown 26.6
2587 Male, age 74, left hemisphere 26.4
1895 Male, age 76, right hemisphere 26.2
1913 Female, age 42, unknown 25.8
2087 Female, age 72, unknown 24.5
1995 Male, age 72, unknown 23.9
1796 Male, age 53, unknown 23.8
2668 Female, age 75, unknown 23.6
1839 Male, age 51, unknown 20.5
2664 Male, age 75, both hemispheres 19.9
Ventral tegmental area
nTPM: 23.4
2218 Male, age 76, both hemispheres 26.5
2410 Female, age 72, unknown 25.6
1915 Female, age 42, unknown 24.4
2021 Male, age 53, unknown 22.3
2223 Female, age 72, unknown 21.2
1942 Male, age 51, unknown 20.5

MIDBRAIN - GTEx RNA-seqi
Average nTPM 16.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 16.0
Samples: 139

Max nTPM: 29.7
Min nTPM: 5.7
Std nTPM: 5.0
Median nTPM: 15.4
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 29.7
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 28.4
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 28.3
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 27.9
GTEX-OHPN-0011-R2A-SM-2I5FB 60-69 years, female 27.3
GTEX-1I1CD-0011-R2a-SM-CM2T3 60-69 years, female 27.1
GTEX-1F48J-0011-R2a-SM-CL535 50-59 years, female 26.2
GTEX-1EU9M-0011-R2b-SM-9QEH7 60-69 years, male 26.0
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 25.2
GTEX-YFC4-0011-R2a-SM-4V6DZ 40-49 years, female 24.6
GTEX-11PRG-0011-R2a-SM-69LQ5 50-59 years, male 23.2
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 31.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 31.1
FF:10158-103A5 76 years, female 31.1

MIDBRAIN - Pig RNA-seqi
Average nTPM 50.7
Pig sample Sample description nTPM
Substantia nigra
nTPM: 42.3
Samples: 4

Max nTPM: 60.1
Min nTPM: 27.5
Sample A Female 60.1
Sample B Female 39.7
Sample C Male 41.9
Sample D Male 27.5
Midbrain
nTPM: 47.5
Samples: 4

Max nTPM: 51.0
Min nTPM: 45.0
Sample A Female 51.0
Sample B Female 45.6
Sample C Male 45.0
Sample D Male 48.2
Periaqueductal gray
nTPM: 36.9
Samples: 3

Max nTPM: 40.6
Min nTPM: 31.3
Sample B Female 38.7
Sample C Male 40.6
Sample D Male 31.3
Superior colliculi
nTPM: 50.7
Samples: 4

Max nTPM: 61.3
Min nTPM: 38.4
Sample A Female 61.3
Sample B Female 48.4
Sample C Male 54.8
Sample D Male 38.4

MIDBRAIN - Mouse RNA-seqi
Average nTPM 47.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 47.1
Samples: 4

Max nTPM: 48.5
Min nTPM: 44.9
Sample A Male 46.3
Sample B Male 48.5
Sample C Female 44.9
Sample D Female 48.5

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.0
70720253 Antisense, RP_050426_03_A12, Mouse strain C57BL/6J (56 days, male) 0.0

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