HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Low
Neuronal cells: Low
RNA expressioni
Consensus:2.1 nTPM
HPA Brain:37.0 nTPM
GTEx:2.1 nTPM
FANTOM5:22.9 Scaled Tags Per Million
Pig:47.7 nTPM
Mouse:15.8 nTPM
Allen mouse:3.1 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA016744Antibody HPA020027
Glial cells Not detectedLow
Neuronal cells MediumLow





HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 37.0
Sample id Sample description nTPM
Hippocampus
nTPM: 31.1
1898 Male, age 80, left hemisphere 39.3
1855 Male, age 76, left hemisphere 32.1
2621 Female, age 67, right hemisphere 32.1
2148 Female, age 91, left hemisphere 31.5
1911 Female, age 85, right hemisphere 28.2
2529 Female, age 94, left hemisphere 23.1
Dentate gyrus
nTPM: 31.1
2531 Female, age 67, both hemispheres 40.8
2010 Male, age 76, both hemispheres 35.8
1927 Female, age 91, both hemispheres 34.4
2246 Female, age 85, both hemispheres 29.3
2530 Female, age 94, left hemisphere 24.8
2528 Male, age 74, both hemispheres 21.5
Entorhinal gyrus
nTPM: 26.3
2764 Male, age 80, right hemisphere 30.6
1787 Male, age 76, left hemisphere 30.3
2686 Male, age 75, right hemisphere 27.8
2613 Female, age 94, left hemisphere 23.7
1938 Female, age 85, left hemisphere 23.4
2117 Female, age 91, right hemisphere 21.8
Hippocampus, CA1
nTPM: 37.0
2045 Male, age 76, both hemispheres 55.7
2749 Male, age 80, left hemisphere 43.6
1873 Female, age 85, both hemispheres 37.1
2082 Female, age 91, right hemisphere 24.4
2527 Male, age 74, both hemispheres 24.4
Hippocampus, CA2
nTPM: 26.8
1892 Male, age 76, both hemispheres 36.0
1963 Male, age 80, left hemisphere 30.5
2113 Female, age 91, right hemisphere 27.2
1940 Female, age 85, left hemisphere 24.9
2437 Female, age 94, left hemisphere 23.1
2249 Male, age 74, both hemispheres 19.1
Hippocampus, CA3
nTPM: 36.9
2620 Female, age 94, left hemisphere 47.9
1867 Male, age 76, both hemispheres 45.5
2137 Male, age 80, left hemisphere 41.6
2861 Female, age 67, both hemispheres 35.4
1891 Female, age 85, both hemispheres 28.1
2436 Male, age 74, both hemispheres 23.2
Parahippocampal cortex
nTPM: 29.3
2693 Female, age 94, both hemispheres 36.7
2018 Male, age 76, both hemispheres 35.2
2245 Female, age 91, both hemispheres 34.0
1850 Male, age 80, both hemispheres 32.9
2532 Female, age 72, left hemisphere 29.1
2250 Female, age 67, right hemisphere 27.8
2622 Female, age 67, right hemisphere 27.4
1990 Female, age 91, right hemisphere 26.1
1933 Female, age 85, both hemispheres 25.1
2692 Male, age 74, both hemispheres 18.5
Perirhinal gyrus
nTPM: 35.1
2521 Female, age 94, right hemisphere 41.2
1841 Female, age 85, right hemisphere 36.0
1794 Male, age 80, right hemisphere 35.6
1847 Female, age 91, left hemisphere 31.4
2848 Male, age 76, right hemisphere 31.2
Subiculum
nTPM: 27.2
1901 Male, age 80, both hemispheres 31.2
2042 Male, age 76, both hemispheres 28.6
2729 Female, age 91, right hemisphere 27.4
1977 Female, age 85, both hemispheres 26.3
2438 Female, age 94, left hemisphere 26.2
2619 Male, age 74, both hemispheres 23.3

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 2.1
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 2.1
Samples: 197

Max nTPM: 6.4
Min nTPM: 0.2
Std nTPM: 1.0
Median nTPM: 1.9
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 6.4
GTEX-131XH-0011-R1a-SM-5DUWA 50-59 years, male 5.9
GTEX-1EWIQ-0011-R1a-SM-9OSX7 70-79 years, female 5.4
GTEX-14C5O-0011-R1b-SM-6AJBW 60-69 years, male 5.2
GTEX-11GSP-0011-R1a-SM-9QEJ3 60-69 years, female 4.7
GTEX-11GS4-0011-R1a-SM-DO129 60-69 years, male 4.4
GTEX-1IY9M-0011-R1a-SM-EXURZ 60-69 years, male 4.3
GTEX-12WSE-0011-R1b-SM-5GU4V 20-29 years, male 4.2
GTEX-145MH-0011-R1b-SM-5PNWY 50-59 years, male 4.2
GTEX-14JIY-0011-R1a-SM-68713 60-69 years, male 4.2
GTEX-WHSE-0011-R1A-SM-3P5ZK 20-29 years, male 4.2
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 22.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 22.9
FF:10153-102I9 76 years, female 24.1
FF:10169-103B7 60 years, female 21.8

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 47.7
Pig sample Sample description nTPM
Subiculum
nTPM: 33.9
Samples: 4

Max nTPM: 38.8
Min nTPM: 30.8
Sample A Female 38.8
Sample B Female 30.8
Sample C Male 31.5
Sample D Male 34.6
Dorsal hippocampus
nTPM: 40.0
Samples: 4

Max nTPM: 45.7
Min nTPM: 33.3
Sample A Female 45.7
Sample B Female 43.4
Sample C Male 33.3
Sample D Male 37.7
Entorhinal cortex
nTPM: 47.8
Samples: 4

Max nTPM: 50.9
Min nTPM: 41.9
Sample A Female 49.0
Sample B Female 41.9
Sample C Male 50.9
Sample D Male 49.2
Ventral hippocampus
nTPM: 28.6
Samples: 4

Max nTPM: 35.0
Min nTPM: 25.3
Sample A Female 28.1
Sample B Female 25.3
Sample C Male 25.9
Sample D Male 35.0

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 15.8
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 15.8
Samples: 4

Max nTPM: 21.5
Min nTPM: 12.3
Sample A Male 13.6
Sample B Male 15.6
Sample C Female 12.3
Sample D Female 21.5
Hippocampal formation
nTPM: 10.1
Samples: 4

Max nTPM: 12.5
Min nTPM: 7.5
Sample A Male 9.1
Sample B Male 12.5
Sample C Female 11.4
Sample D Female 7.5

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 3.1
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 3.1
69446893 Antisense, RP_050419_01_H04, Mouse strain C57BL/6J (56 days, male) 3.1

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