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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
34.1
nTPM
Monaco:
22.2
nTPM
Schmiedel:
14.0
TPM
T-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max nTPM
34.1
HPA sample
nTPM
gdT-cell nTPM: 19.9
Samples: 6
Max nTPM: 23.0
Min nTPM: 16.7
P10809_1007
22.3
P10809_1022
16.7
P10809_1041
17.1
P10809_1060
23.0
P10809_1077
20.2
P10809_1098
20.2
MAIT T-cell nTPM: 24.5
Samples: 6
Max nTPM: 31.4
Min nTPM: 14.3
P10809_1006
14.3
P10809_1024
31.4
P10809_1043
29.6
P10809_1062
23.0
P10809_1083
27.7
P10809_1097
21.0
Memory CD4 T-cell nTPM: 28.1
Samples: 6
Max nTPM: 30.0
Min nTPM: 25.9
P10809_1014
25.9
P10809_1026
28.5
P10809_1045
28.0
P10809_1064
29.0
P10809_1086
27.1
P10809_1113
30.0
Memory CD8 T-cell nTPM: 27.1
Samples: 5
Max nTPM: 31.2
Min nTPM: 19.6
P10809_1012
29.1
P10809_1027
31.2
P10809_1046
19.6
P10809_1065
28.4
P10809_1111
27.3
Naive CD4 T-cell nTPM: 34.1
Samples: 6
Max nTPM: 45.7
Min nTPM: 26.1
P10809_1015
30.1
P10809_1030
45.7
P10809_1049
36.1
P10809_1068
26.1
P10809_1085
34.3
P10809_1112
32.5
Naive CD8 T-cell nTPM: 32.9
Samples: 6
Max nTPM: 41.6
Min nTPM: 25.6
P10809_1016
38.5
P10809_1031
41.6
P10809_1050
28.3
P10809_1069
35.0
P10809_1087
25.6
P10809_1110
28.6
T-reg nTPM: 33.4
Samples: 6
Max nTPM: 43.3
Min nTPM: 25.3
P10809_1018
26.1
P10809_1037
25.3
P10809_1056
42.5
P10809_1075
43.3
P10809_1094
34.7
P10809_1106
28.4
T-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max nTPM
22.2
Monaco sample
nTPM
Central memory CD8 T-cell nTPM: 17.9
Samples: 4
Max nTPM: 26.0
Min nTPM: 13.5
RHH5202_R3573
13.5
RHH5230_R3602
16.6
RHH5259_R3631
15.4
RHH5288_R3660
26.0
Effector memory CD8 T-cell nTPM: 13.3
Samples: 4
Max nTPM: 19.0
Min nTPM: 6.6
RHH5203_R3574
19.0
RHH5231_R3603
18.8
RHH5260_R3632
8.9
RHH5289_R3661
6.6
MAIT T-cell nTPM: 11.7
Samples: 4
Max nTPM: 15.0
Min nTPM: 6.6
RHH5233_R3605
15.0
RHH5205_R3576
6.6
RHH5262_R3634
10.8
RHH5297_R3663
14.5
Memory CD4 T-cell TFH nTPM: 11.0
Samples: 4
Max nTPM: 16.1
Min nTPM: 7.0
RHH5300_R3666
12.6
RHH5236_R3608
16.1
RHH5265_R3637
7.0
RHH5208_R3579
8.1
Memory CD4 T-cell Th1 nTPM: 22.0
Samples: 4
Max nTPM: 43.1
Min nTPM: 12.6
RHH5210_R3581
17.4
RHH5302_R3668
43.1
RHH5238_R3610
12.6
RHH5267_R3639
14.8
Memory CD4 T-cell Th1/Th17 nTPM: 14.8
Samples: 4
Max nTPM: 29.6
Min nTPM: 8.1
RHH5303_R3669
29.6
RHH5211_R3582
9.8
RHH5239_R3611
11.5
RHH5268_R3640
8.1
Memory CD4 T-cell Th17 nTPM: 12.6
Samples: 4
Max nTPM: 15.3
Min nTPM: 10.0
RHH5304_R3670
15.3
RHH5212_R3583
12.1
RHH5240_R3612
10.0
RHH5269_R3641
12.8
Memory CD4 T-cell Th2 nTPM: 13.7
Samples: 4
Max nTPM: 16.1
Min nTPM: 8.9
RHH5305_R3671
14.7
RHH5213_R3584
16.1
RHH5241_R3613
14.9
RHH5270_R3642
8.9
Naive CD4 T-cell nTPM: 18.6
Samples: 4
Max nTPM: 27.0
Min nTPM: 8.3
RHH5306_R3672
26.5
RHH5214_R3585
27.0
RHH5242_R3614
8.3
RHH5271_R3643
12.5
Naive CD8 T-cell nTPM: 15.9
Samples: 4
Max nTPM: 20.1
Min nTPM: 10.7
RHH5201_R3572
17.0
RHH5229_R3601
10.7
RHH5258_R3630
15.8
RHH5287_R3659
20.1
Non-Vd2 gdTCR nTPM: 21.3
Samples: 4
Max nTPM: 28.9
Min nTPM: 15.9
RHH5235_R3607
15.9
RHH5264_R3636
18.5
RHH5207_R3578
21.9
RHH5299_R3665
28.9
T-reg nTPM: 22.2
Samples: 4
Max nTPM: 30.8
Min nTPM: 18.0
RHH5301_R3667
30.8
RHH5237_R3609
18.0
RHH5266_R3638
18.0
RHH5209_R3580
22.0
Terminal effector memory CD4 T-cell nTPM: 9.8
Samples: 2
Max nTPM: 11.4
Min nTPM: 8.1
RHH5243_R3615
11.4
RHH5272_R3644
8.1
Terminal effector memory CD8 T-cell nTPM: 19.4
Samples: 4
Max nTPM: 38.1
Min nTPM: 9.4
RHH5232_R3604
9.4
RHH5204_R3575
38.1
RHH5261_R3633
13.7
RHH5296_R3662
16.5
Vd2 gdTCR nTPM: 12.9
Samples: 4
Max nTPM: 24.3
Min nTPM: 7.7
RHH5234_R3606
7.7
RHH5206_R3577
24.3
RHH5263_R3635
8.5
RHH5298_R3664
11.2
T-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
The Human Protein Atlas project is funded
