BASAL GANGLIA - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:23.7 nTPM
HPA Brain:33.6 nTPM
GTEx:23.7 nTPM
FANTOM5:51.7 Scaled Tags Per Million
Pig:94.1 nTPM
Mouse:97.9 nTPM
Allen mouse:0.4 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 33.6
Sample id Sample description nTPM
Caudate nucleus
nTPM: 33.5
2481 Female, age 94, left hemisphere 38.2
2846 Female, age 79, unknown 37.7
2290 Female, age 72, unknown 36.8
1854 Male, age 80, left hemisphere 35.1
2288 Male, age 75, left hemisphere 34.7
1857 Female, age 85, left hemisphere 31.7
1781 Male, age 74, unknown 29.9
2289 Male, age 61, right hemisphere 23.7
Globus pallidus, externus
nTPM: 27.7
2395 Male, age 75, both hemispheres 35.1
1996 Male, age 80, right hemisphere 34.3
2772 Female, age 79, unknown 34.0
2646 Male, age 61, right hemisphere 20.2
2567 Female, age 72, unknown 14.9
Globus pallidus, internus
nTPM: 29.3
2483 Female, age 94, right hemisphere 37.3
2287 Male, age 75, right hemisphere 36.7
2778 Female, age 91, both hemispheres 32.4
1818 Male, age 74, unknown 28.7
2037 Male, age 80, right hemisphere 27.1
2111 Female, age 85, right hemisphere 24.1
2566 Female, age 72, unknown 18.6
Nucleus accumbens
nTPM: 33.6
1856 Female, age 91, right hemisphere 41.5
2286 Male, age 75, left hemisphere 38.5
2391 Female, age 94, left hemisphere 37.3
1806 Female, age 85, left hemisphere 34.3
2698 Female, age 72, unknown 32.5
1783 Male, age 74, unknown 30.7
2824 Male, age 61, right hemisphere 29.2
2732 Male, age 80, right hemisphere 24.6
Nucleus basalis of Meynert
nTPM: 27.1
2393 Male, age 80, right hemisphere 30.2
2821 Male, age 75, both hemispheres 29.3
2484 Female, age 94, left hemisphere 29.1
2569 Male, age 61, both hemispheres 19.9
Nucleus of the diagonal band
nTPM: 31.8
1812 Female, age 91, both hemispheres 39.8
2775 Male, age 80, right hemisphere 32.4
2029 Male, age 61, right hemisphere 30.4
1979 Male, age 74, unknown 28.7
2195 Female, age 85, both hemispheres 27.9
Putamen
nTPM: 30.5
2466 Female, age 79, unknown 38.1
2482 Female, age 94, left hemisphere 34.8
1838 Male, age 80, right hemisphere 34.1
1937 Female, age 91, right hemisphere 33.6
1829 Male, age 74, unknown 31.8
2489 Female, age 72, unknown 20.8
2647 Male, age 75, left hemisphere 20.0
Septal nuclei
nTPM: 31.9
2031 Female, age 72, unknown 46.3
1960 Male, age 74, unknown 34.7
2009 Female, age 91, both hemispheres 33.7
2394 Male, age 61, left hemisphere 30.9
2199 Male, age 80, right hemisphere 27.5
2629 Female, age 94, right hemisphere 26.9
2059 Female, age 85, both hemispheres 23.3
Stria terminalis, bed nucleus
nTPM: 28.3
1974 Female, age 91, both hemispheres 31.4
2486 Female, age 94, both hemispheres 28.2
2201 Male, age 74, unknown 25.3

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 23.7
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 23.7
Samples: 246

Max nTPM: 51.5
Min nTPM: 6.3
Std nTPM: 8.5
Median nTPM: 22.7
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 51.5
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 47.1
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 44.6
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 44.4
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 43.9
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 43.9
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 42.9
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 42.3
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 40.5
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 39.5
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 38.9
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 23.3
Samples: 246

Max nTPM: 45.8
Min nTPM: 5.6
Std nTPM: 7.5
Median nTPM: 24.1
GTEX-1B8L1-0011-R6b-SM-7P8SU 60-69 years, male 45.8
GTEX-1A3MX-0011-R6a-SM-7P8S9 60-69 years, male 45.3
GTEX-1LVAO-0011-R6b-SM-EZ6MX 60-69 years, male 44.0
GTEX-1AX9I-0011-R6a-SM-7P8PK 60-69 years, male 42.7
GTEX-1B996-0011-R6b-SM-793AQ 60-69 years, male 39.2
GTEX-14E7W-0011-R6b-SM-5ZZV3 70-79 years, male 37.9
GTEX-N7MS-0011-R6a-SM-2HMJ4 60-69 years, male 37.9
GTEX-1F7RK-0011-R6b-SM-ARZMG 20-29 years, female 36.5
GTEX-14BMV-0011-R6b-SM-5YY9I 50-59 years, male 36.0
GTEX-NPJ7-0011-R6a-SM-2I3G7 60-69 years, female 35.9
GTEX-1EKGG-0011-R6a-SM-CL538 60-69 years, male 35.2
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Brain - Putamen (basal ganglia)
Average nTPM: 22.4
Samples: 205

Max nTPM: 52.0
Min nTPM: 8.0
Std nTPM: 8.3
Median nTPM: 20.6
GTEX-16YQH-0011-R7a-SM-79ON1 30-39 years, male 52.0
GTEX-1C6WA-0011-R7b-SM-7P8S8 60-69 years, male 46.8
GTEX-1B996-0011-R7b-SM-7IGNT 60-69 years, male 46.4
GTEX-1AX9I-0011-R7b-SM-7P8Q3 60-69 years, male 45.5
GTEX-14PN4-0011-R7b-SM-69LQQ 50-59 years, male 44.5
GTEX-WHSE-0011-R7A-SM-3P5YZ 20-29 years, male 42.3
GTEX-12WSI-0011-R7b-SM-5GU78 50-59 years, male 42.2
GTEX-1EMGI-0011-R7b-SM-9QEH5 60-69 years, male 40.8
GTEX-13O3Q-0011-R7a-SM-5KM38 50-59 years, male 40.0
GTEX-1HFI6-0011-R7b-SM-CM2SS 40-49 years, male 38.0
GTEX-145MH-0011-R7a-SM-5PNWH 50-59 years, male 37.8
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 51.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 42.8
FF:10164-103B2 76 years, female 42.8
Nucleus accumbens
Scaled Tags Per Million: 35.8
FF:10037-101F1 23-56 years, mixed 35.8
Putamen
Scaled Tags Per Million: 51.7
FF:10176-103C5 60 years, female 51.7
Globus pallidus
Scaled Tags Per Million: 35.5
FF:10175-103C4 60 years, female 40.8
FF:10161-103A8 76 years, female 30.3

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 94.1
Pig sample Sample description nTPM
Caudate
nTPM: 79.1
Samples: 4

Max nTPM: 88.9
Min nTPM: 73.9
Sample A Female 78.4
Sample B Female 75.0
Sample C Male 88.9
Sample D Male 73.9
Putamen
nTPM: 94.1
Samples: 4

Max nTPM: 141.7
Min nTPM: 70.0
Sample A Female 82.7
Sample B Female 70.0
Sample C Male 141.7
Sample D Male 81.9
Septum
nTPM: 79.1
Samples: 4

Max nTPM: 89.6
Min nTPM: 67.3
Sample A Female 80.2
Sample B Female 67.3
Sample C Male 89.6
Sample D Male 79.2
Ventral pallidum
nTPM: 72.1
Samples: 4

Max nTPM: 79.8
Min nTPM: 62.3
Sample A Female 62.3
Sample B Female 79.8
Sample C Male 79.0
Sample D Male 67.3

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 97.9
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 81.6
Samples: 4

Max nTPM: 83.1
Min nTPM: 79.9
Sample A Male 81.7
Sample B Male 83.1
Sample C Female 79.9
Sample D Female 81.6
Septum
nTPM: 97.9
Samples: 4

Max nTPM: 109.3
Min nTPM: 86.2
Sample A Male 86.2
Sample B Male 109.3
Sample C Female 105.4
Sample D Female 90.6
Ventral forebrain
nTPM: 93.6
Samples: 4

Max nTPM: 103.3
Min nTPM: 89.6
Sample A Male 90.3
Sample B Male 89.6
Sample C Female 103.3
Sample D Female 91.2

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.4
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.4
512770 Antisense, RP_040809_02_D08, Mouse strain C57BL/6J (56 days, male) 0.4
Pallidum
Expression energy: 0.2
512770 Antisense, RP_040809_02_D08, Mouse strain C57BL/6J (56 days, male) 0.2

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