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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
70.0
nTPM
Monaco:
16.4
nTPM
Schmiedel:
34.9
TPM
T-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max nTPM
70.0
HPA sample
nTPM
gdT-cell nTPM: 56.7
Samples: 6
Max nTPM: 76.5
Min nTPM: 35.7
P10809_1007
35.7
P10809_1022
61.4
P10809_1041
76.5
P10809_1060
48.9
P10809_1077
52.9
P10809_1098
64.7
MAIT T-cell nTPM: 59.3
Samples: 6
Max nTPM: 89.2
Min nTPM: 43.9
P10809_1006
43.9
P10809_1024
49.5
P10809_1043
89.2
P10809_1062
61.9
P10809_1083
49.6
P10809_1097
61.7
Memory CD4 T-cell nTPM: 57.4
Samples: 6
Max nTPM: 69.5
Min nTPM: 32.4
P10809_1014
32.4
P10809_1026
66.0
P10809_1045
63.3
P10809_1064
59.5
P10809_1086
53.6
P10809_1113
69.5
Memory CD8 T-cell nTPM: 57.4
Samples: 5
Max nTPM: 70.5
Min nTPM: 27.7
P10809_1012
27.7
P10809_1027
67.8
P10809_1046
67.9
P10809_1065
53.3
P10809_1111
70.5
Naive CD4 T-cell nTPM: 66.3
Samples: 6
Max nTPM: 95.7
Min nTPM: 26.6
P10809_1015
26.6
P10809_1030
92.1
P10809_1049
95.7
P10809_1068
52.1
P10809_1085
63.3
P10809_1112
68.2
Naive CD8 T-cell nTPM: 57.8
Samples: 6
Max nTPM: 71.8
Min nTPM: 33.2
P10809_1016
33.2
P10809_1031
54.8
P10809_1050
71.8
P10809_1069
66.9
P10809_1087
54.5
P10809_1110
65.7
T-reg nTPM: 70.0
Samples: 6
Max nTPM: 107.2
Min nTPM: 37.5
P10809_1018
37.5
P10809_1037
43.5
P10809_1056
107.2
P10809_1075
69.9
P10809_1094
84.3
P10809_1106
77.6
T-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max nTPM
16.4
Monaco sample
nTPM
Central memory CD8 T-cell nTPM: 7.3
Samples: 4
Max nTPM: 11.4
Min nTPM: 4.2
RHH5202_R3573
4.2
RHH5230_R3602
7.0
RHH5259_R3631
11.4
RHH5288_R3660
6.6
Effector memory CD8 T-cell nTPM: 9.4
Samples: 4
Max nTPM: 11.0
Min nTPM: 6.1
RHH5203_R3574
9.6
RHH5231_R3603
11.0
RHH5260_R3632
10.7
RHH5289_R3661
6.1
MAIT T-cell nTPM: 8.8
Samples: 4
Max nTPM: 10.1
Min nTPM: 6.9
RHH5233_R3605
6.9
RHH5205_R3576
8.2
RHH5262_R3634
9.8
RHH5297_R3663
10.1
Memory CD4 T-cell TFH nTPM: 10.4
Samples: 4
Max nTPM: 19.8
Min nTPM: 6.8
RHH5300_R3666
19.8
RHH5236_R3608
7.0
RHH5265_R3637
8.1
RHH5208_R3579
6.8
Memory CD4 T-cell Th1 nTPM: 8.5
Samples: 4
Max nTPM: 10.8
Min nTPM: 4.0
RHH5210_R3581
4.0
RHH5302_R3668
9.1
RHH5238_R3610
10.8
RHH5267_R3639
10.2
Memory CD4 T-cell Th1/Th17 nTPM: 12.1
Samples: 4
Max nTPM: 18.6
Min nTPM: 4.9
RHH5303_R3669
11.1
RHH5211_R3582
13.8
RHH5239_R3611
4.9
RHH5268_R3640
18.6
Memory CD4 T-cell Th17 nTPM: 10.0
Samples: 4
Max nTPM: 19.2
Min nTPM: 3.7
RHH5304_R3670
10.9
RHH5212_R3583
19.2
RHH5240_R3612
3.7
RHH5269_R3641
6.2
Memory CD4 T-cell Th2 nTPM: 9.5
Samples: 4
Max nTPM: 14.4
Min nTPM: 6.7
RHH5305_R3671
6.7
RHH5213_R3584
9.4
RHH5241_R3613
14.4
RHH5270_R3642
7.6
Naive CD4 T-cell nTPM: 15.3
Samples: 4
Max nTPM: 20.6
Min nTPM: 9.6
RHH5306_R3672
20.6
RHH5214_R3585
20.0
RHH5242_R3614
10.9
RHH5271_R3643
9.6
Naive CD8 T-cell nTPM: 9.3
Samples: 4
Max nTPM: 11.7
Min nTPM: 6.5
RHH5201_R3572
6.5
RHH5229_R3601
11.0
RHH5258_R3630
11.7
RHH5287_R3659
7.8
Non-Vd2 gdTCR nTPM: 12.1
Samples: 4
Max nTPM: 15.6
Min nTPM: 8.1
RHH5235_R3607
12.1
RHH5264_R3636
12.7
RHH5207_R3578
8.1
RHH5299_R3665
15.6
T-reg nTPM: 13.2
Samples: 4
Max nTPM: 17.9
Min nTPM: 8.5
RHH5301_R3667
12.9
RHH5237_R3609
8.5
RHH5266_R3638
17.9
RHH5209_R3580
13.6
Terminal effector memory CD4 T-cell nTPM: 4.8
Samples: 2
Max nTPM: 6.7
Min nTPM: 2.8
RHH5243_R3615
2.8
RHH5272_R3644
6.7
Terminal effector memory CD8 T-cell nTPM: 12.0
Samples: 4
Max nTPM: 18.8
Min nTPM: 4.8
RHH5232_R3604
4.8
RHH5204_R3575
18.8
RHH5261_R3633
16.4
RHH5296_R3662
8.1
Vd2 gdTCR nTPM: 16.4
Samples: 4
Max nTPM: 22.6
Min nTPM: 9.7
RHH5234_R3606
15.6
RHH5206_R3577
22.6
RHH5263_R3635
9.7
RHH5298_R3664
17.6
T-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
The Human Protein Atlas project is funded
