MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:2.8 nTPM
HPA Brain:14.6 nTPM
GTEx:2.8 nTPM
FANTOM5:47.8 Scaled Tags Per Million
Pig:27.4 nTPM
Mouse:70.5 nTPM
Allen mouse:0.5 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 14.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 13.5
2411 Female, age 72, unknown 14.9
2219 Male, age 76, both hemispheres 14.5
1833 Male, age 53, unknown 14.2
1830 Male, age 51, unknown 14.0
2019 Male, age 18, unknown 13.9
2666 Male, age 74, left hemisphere 13.9
1870 Female, age 42, unknown 13.5
1827 Male, age 72, unknown 12.2
2586 Male, age 75, left hemisphere 12.2
2828 Female, age 72, unknown 11.9
Dorsal raphe nucleus
nTPM: 13.8
2016 Female, age 72, unknown 14.7
2750 Male, age 76, both hemispheres 14.1
1828 Male, age 53, unknown 14.0
2298 Female, age 72, unknown 13.4
2047 Male, age 72, unknown 12.8
Inferior colliculus
nTPM: 13.1
1890 Male, age 53, unknown 13.7
2849 Male, age 72, unknown 13.7
1848 Female, age 42, unknown 12.6
2097 Female, age 72, unknown 12.5
Median raphe nucleus
nTPM: 14.6
2220 Male, age 76, midline 14.6
Periaquaductal grey, anterior
nTPM: 12.3
2502 Female, age 75, unknown 14.6
1947 Male, age 18, unknown 11.3
1795 Male, age 51, unknown 10.9
Periaquaductal grey, dorsal
nTPM: 13.8
1840 Male, age 53, unknown 14.4
2850 Male, age 76, both hemispheres 14.4
2464 Female, age 72, unknown 14.0
1831 Male, age 72, unknown 12.4
Periaquaductal grey, lateral
nTPM: 12.1
2140 Male, age 76, both hemispheres 13.7
2053 Male, age 18, unknown 11.6
2272 Male, age 74, both hemispheres 10.9
Pretectal area
nTPM: 12.1
2316 Male, age 76, right hemisphere 13.5
2224 Female, age 72, unknown 13.1
1944 Female, age 72, unknown 12.7
2407 Male, age 75, both hemispheres 12.7
2825 Male, age 18, unknown 12.6
1815 Male, age 53, unknown 11.9
1817 Female, age 42, unknown 11.9
2273 Male, age 74, both hemispheres 11.8
2007 Male, age 72, unknown 11.6
2667 Female, age 75, unknown 11.1
1816 Male, age 51, unknown 10.2
Red nucleus
nTPM: 12.9
2785 Male, age 18, unknown 14.3
1865 Male, age 51, unknown 14.2
2227 Male, age 72, unknown 13.3
1821 Female, age 72, unknown 13.2
2769 Male, age 72, unknown 13.1
2503 Female, age 72, unknown 12.8
2823 Male, age 76, right hemisphere 12.7
1904 Male, age 53, unknown 12.4
2584 Male, age 75, left hemisphere 12.4
1954 Female, age 42, unknown 12.2
2588 Male, age 74, left hemisphere 12.2
2725 Female, age 75, unknown 12.0
Substantia nigra
nTPM: 13.8
2409 Female, age 72, unknown 15.7
2241 Male, age 72, unknown 15.4
2699 Male, age 18, unknown 15.3
1851 Male, age 51, unknown 14.4
1916 Female, age 42, unknown 14.4
2665 Male, age 74, both hemispheres 13.4
1941 Male, age 53, unknown 13.3
1889 Female, age 72, unknown 12.4
2590 Female, age 75, unknown 12.4
2583 Male, age 75, right hemisphere 11.6
Superior colliculus
nTPM: 12.8
1995 Male, age 72, unknown 14.3
1913 Female, age 42, unknown 14.2
2664 Male, age 75, both hemispheres 13.8
2668 Female, age 75, unknown 13.7
1895 Male, age 76, right hemisphere 13.4
1839 Male, age 51, unknown 13.0
2587 Male, age 74, left hemisphere 12.2
2087 Female, age 72, unknown 11.6
1796 Male, age 53, unknown 11.2
2261 Male, age 18, unknown 10.6
Ventral tegmental area
nTPM: 12.8
1942 Male, age 51, unknown 13.9
2021 Male, age 53, unknown 13.6
1915 Female, age 42, unknown 12.8
2410 Female, age 72, unknown 12.6
2223 Female, age 72, unknown 12.3
2218 Male, age 76, both hemispheres 11.6

MIDBRAIN - GTEx RNA-seqi
Average nTPM 2.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 2.8
Samples: 139

Max nTPM: 4.8
Min nTPM: 1.7
Std nTPM: 0.5
Median nTPM: 2.8
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 4.8
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 4.4
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 4.2
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 4.0
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 4.0
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 3.8
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 3.8
GTEX-OHPN-0011-R2A-SM-2I5FB 60-69 years, female 3.8
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 3.8
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 3.8
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 3.8
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 47.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 47.8
FF:10158-103A5 76 years, female 47.8

MIDBRAIN - Pig RNA-seqi
Average nTPM 27.4
Pig sample Sample description nTPM
Substantia nigra
nTPM: 24.6
Samples: 4

Max nTPM: 32.4
Min nTPM: 13.7
Sample A Female 32.4
Sample B Female 22.1
Sample C Male 30.2
Sample D Male 13.7
Midbrain
nTPM: 25.1
Samples: 4

Max nTPM: 36.9
Min nTPM: 13.1
Sample A Female 13.1
Sample B Female 25.3
Sample C Male 36.9
Sample D Male 25.2
Periaqueductal gray
nTPM: 20.3
Samples: 3

Max nTPM: 22.1
Min nTPM: 17.4
Sample B Female 21.3
Sample C Male 22.1
Sample D Male 17.4
Superior colliculi
nTPM: 27.4
Samples: 4

Max nTPM: 38.8
Min nTPM: 22.1
Sample A Female 24.7
Sample B Female 22.1
Sample C Male 38.8
Sample D Male 23.9

MIDBRAIN - Mouse RNA-seqi
Average nTPM 70.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 70.5
Samples: 4

Max nTPM: 73.7
Min nTPM: 68.0
Sample A Male 69.4
Sample B Male 73.7
Sample C Female 68.0
Sample D Female 70.9

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.5
393255 Antisense, RP_040809_01_A06, Mouse strain C57BL/6J (56 days, male) 0.5

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