MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:34.5 nTPM
HPA Brain:25.6 nTPM
GTEx:34.5 nTPM
FANTOM5:24.1 Scaled Tags Per Million
Pig:9.0 nTPM
Mouse:26.9 nTPM
Allen mouse:0.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 25.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 20.3
1827 Male, age 72, unknown 25.3
2219 Male, age 76, both hemispheres 21.3
1833 Male, age 53, unknown 21.1
1870 Female, age 42, unknown 20.9
2586 Male, age 75, left hemisphere 20.8
2411 Female, age 72, unknown 20.2
1830 Male, age 51, unknown 19.9
2666 Male, age 74, left hemisphere 19.1
2828 Female, age 72, unknown 18.7
2019 Male, age 18, unknown 15.9
Dorsal raphe nucleus
nTPM: 23.5
2047 Male, age 72, unknown 25.7
2298 Female, age 72, unknown 24.1
2750 Male, age 76, both hemispheres 23.9
1828 Male, age 53, unknown 22.4
2016 Female, age 72, unknown 21.5
Inferior colliculus
nTPM: 21.7
2849 Male, age 72, unknown 23.9
1848 Female, age 42, unknown 22.4
1890 Male, age 53, unknown 21.3
2097 Female, age 72, unknown 19.3
Median raphe nucleus
nTPM: 25.6
2220 Male, age 76, midline 25.6
Periaquaductal grey, anterior
nTPM: 23.4
1947 Male, age 18, unknown 29.8
1795 Male, age 51, unknown 20.6
2502 Female, age 75, unknown 19.9
Periaquaductal grey, dorsal
nTPM: 21.9
2850 Male, age 76, both hemispheres 24.2
1840 Male, age 53, unknown 23.8
2464 Female, age 72, unknown 21.4
1831 Male, age 72, unknown 18.3
Periaquaductal grey, lateral
nTPM: 20.6
2272 Male, age 74, both hemispheres 21.4
2140 Male, age 76, both hemispheres 20.5
2053 Male, age 18, unknown 20.0
Pretectal area
nTPM: 21.4
2825 Male, age 18, unknown 25.5
2667 Female, age 75, unknown 25.0
2224 Female, age 72, unknown 22.0
2273 Male, age 74, both hemispheres 21.8
1816 Male, age 51, unknown 21.7
1817 Female, age 42, unknown 21.1
2407 Male, age 75, both hemispheres 21.1
1815 Male, age 53, unknown 20.8
1944 Female, age 72, unknown 19.9
2007 Male, age 72, unknown 18.8
2316 Male, age 76, right hemisphere 17.9
Red nucleus
nTPM: 20.2
1821 Female, age 72, unknown 26.5
2588 Male, age 74, left hemisphere 22.2
2725 Female, age 75, unknown 22.0
2503 Female, age 72, unknown 20.8
1954 Female, age 42, unknown 20.0
1865 Male, age 51, unknown 19.8
2584 Male, age 75, left hemisphere 19.8
2823 Male, age 76, right hemisphere 19.8
2769 Male, age 72, unknown 19.5
1904 Male, age 53, unknown 19.0
2227 Male, age 72, unknown 18.5
2785 Male, age 18, unknown 14.4
Substantia nigra
nTPM: 21.8
1916 Female, age 42, unknown 25.1
2241 Male, age 72, unknown 24.8
1851 Male, age 51, unknown 24.4
2699 Male, age 18, unknown 23.4
2665 Male, age 74, both hemispheres 22.9
1889 Female, age 72, unknown 20.9
1941 Male, age 53, unknown 20.5
2409 Female, age 72, unknown 19.9
2590 Female, age 75, unknown 18.3
2583 Male, age 75, right hemisphere 17.5
Superior colliculus
nTPM: 21.0
1895 Male, age 76, right hemisphere 23.6
1796 Male, age 53, unknown 23.4
2261 Male, age 18, unknown 22.5
1839 Male, age 51, unknown 22.4
2668 Female, age 75, unknown 22.2
2587 Male, age 74, left hemisphere 20.5
2664 Male, age 75, both hemispheres 19.4
2087 Female, age 72, unknown 19.1
1913 Female, age 42, unknown 18.8
1995 Male, age 72, unknown 18.0
Ventral tegmental area
nTPM: 22.7
1915 Female, age 42, unknown 25.9
2223 Female, age 72, unknown 24.2
2218 Male, age 76, both hemispheres 21.9
2410 Female, age 72, unknown 21.9
2021 Male, age 53, unknown 21.6
1942 Male, age 51, unknown 20.9

MIDBRAIN - GTEx RNA-seqi
Average nTPM 34.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 34.5
Samples: 139

Max nTPM: 65.5
Min nTPM: 18.3
Std nTPM: 8.5
Median nTPM: 33.3
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 65.5
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 59.2
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 57.7
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 52.5
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 51.9
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 50.6
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 49.4
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 48.6
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 48.2
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 48.1
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 47.4
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 24.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 24.1
FF:10158-103A5 76 years, female 24.1

MIDBRAIN - Pig RNA-seqi
Average nTPM 9.0
Pig sample Sample description nTPM
Substantia nigra
nTPM: 9.0
Samples: 4

Max nTPM: 10.1
Min nTPM: 8.1
Sample A Female 8.1
Sample B Female 9.4
Sample C Male 8.4
Sample D Male 10.1
Midbrain
nTPM: 8.7
Samples: 4

Max nTPM: 11.3
Min nTPM: 5.8
Sample A Female 10.3
Sample B Female 11.3
Sample C Male 7.2
Sample D Male 5.8
Periaqueductal gray
nTPM: 8.8
Samples: 3

Max nTPM: 9.1
Min nTPM: 8.6
Sample B Female 9.1
Sample C Male 8.6
Sample D Male 8.7
Superior colliculi
nTPM: 7.6
Samples: 4

Max nTPM: 8.2
Min nTPM: 6.7
Sample A Female 8.2
Sample B Female 6.7
Sample C Male 7.1
Sample D Male 8.2

MIDBRAIN - Mouse RNA-seqi
Average nTPM 26.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 27.0
Samples: 4

Max nTPM: 29.3
Min nTPM: 24.7
Sample A Male 29.3
Sample B Male 25.3
Sample C Female 28.5
Sample D Female 24.7

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.0
77910785 Antisense, RP_070208_04_G07, Mouse strain C57BL/6J (56 days, male) 0.0

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