MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:32.2 nTPM
HPA Brain:51.7 nTPM
GTEx:32.2 nTPM
FANTOM5:71.4 Scaled Tags Per Million
Pig:27.5 nTPM
Mouse:12.2 nTPM
Allen mouse:0.0 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 51.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 45.2
2019 Male, age 18, unknown 55.2
2586 Male, age 75, left hemisphere 52.0
2411 Female, age 72, unknown 50.1
1833 Male, age 53, unknown 44.6
1827 Male, age 72, unknown 43.9
2666 Male, age 74, left hemisphere 43.3
1830 Male, age 51, unknown 42.2
1870 Female, age 42, unknown 42.0
2828 Female, age 72, unknown 40.3
2219 Male, age 76, both hemispheres 38.8
Dorsal raphe nucleus
nTPM: 44.3
1828 Male, age 53, unknown 46.4
2047 Male, age 72, unknown 46.1
2750 Male, age 76, both hemispheres 46.0
2298 Female, age 72, unknown 41.7
2016 Female, age 72, unknown 41.2
Inferior colliculus
nTPM: 41.7
2097 Female, age 72, unknown 49.0
1890 Male, age 53, unknown 45.2
1848 Female, age 42, unknown 41.0
2849 Male, age 72, unknown 31.7
Median raphe nucleus
nTPM: 45.8
2220 Male, age 76, midline 45.8
Periaquaductal grey, anterior
nTPM: 44.9
2502 Female, age 75, unknown 49.7
1947 Male, age 18, unknown 46.8
1795 Male, age 51, unknown 38.2
Periaquaductal grey, dorsal
nTPM: 38.0
2464 Female, age 72, unknown 41.6
1840 Male, age 53, unknown 39.5
1831 Male, age 72, unknown 36.2
2850 Male, age 76, both hemispheres 34.8
Periaquaductal grey, lateral
nTPM: 32.5
2053 Male, age 18, unknown 35.7
2272 Male, age 74, both hemispheres 31.3
2140 Male, age 76, both hemispheres 30.4
Pretectal area
nTPM: 47.0
1816 Male, age 51, unknown 58.0
2007 Male, age 72, unknown 57.5
1817 Female, age 42, unknown 55.5
1944 Female, age 72, unknown 55.0
1815 Male, age 53, unknown 51.9
2667 Female, age 75, unknown 46.3
2407 Male, age 75, both hemispheres 39.8
2224 Female, age 72, unknown 39.7
2273 Male, age 74, both hemispheres 39.2
2316 Male, age 76, right hemisphere 37.9
2825 Male, age 18, unknown 35.7
Red nucleus
nTPM: 48.7
1821 Female, age 72, unknown 61.3
1954 Female, age 42, unknown 56.1
2503 Female, age 72, unknown 49.3
1904 Male, age 53, unknown 48.7
1865 Male, age 51, unknown 48.4
2785 Male, age 18, unknown 48.2
2227 Male, age 72, unknown 46.7
2769 Male, age 72, unknown 45.8
2725 Female, age 75, unknown 45.7
2823 Male, age 76, right hemisphere 45.5
2584 Male, age 75, left hemisphere 44.4
2588 Male, age 74, left hemisphere 44.2
Substantia nigra
nTPM: 51.7
2241 Male, age 72, unknown 67.8
1916 Female, age 42, unknown 57.3
1889 Female, age 72, unknown 56.3
1851 Male, age 51, unknown 55.6
2409 Female, age 72, unknown 55.4
1941 Male, age 53, unknown 49.6
2583 Male, age 75, right hemisphere 46.2
2699 Male, age 18, unknown 44.6
2665 Male, age 74, both hemispheres 42.7
2590 Female, age 75, unknown 41.3
Superior colliculus
nTPM: 43.6
2664 Male, age 75, both hemispheres 52.5
2668 Female, age 75, unknown 50.8
2087 Female, age 72, unknown 49.4
2261 Male, age 18, unknown 45.7
2587 Male, age 74, left hemisphere 42.0
1895 Male, age 76, right hemisphere 41.0
1913 Female, age 42, unknown 40.1
1839 Male, age 51, unknown 38.4
1995 Male, age 72, unknown 38.4
1796 Male, age 53, unknown 37.8
Ventral tegmental area
nTPM: 46.6
2410 Female, age 72, unknown 54.3
1942 Male, age 51, unknown 47.6
1915 Female, age 42, unknown 47.2
2218 Male, age 76, both hemispheres 47.2
2223 Female, age 72, unknown 42.4
2021 Male, age 53, unknown 40.8

MIDBRAIN - GTEx RNA-seqi
Average nTPM 32.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 32.2
Samples: 139

Max nTPM: 52.9
Min nTPM: 22.1
Std nTPM: 6.2
Median nTPM: 30.6
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 52.9
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 51.9
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 51.2
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 49.4
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 47.8
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 46.0
GTEX-1HFI6-0011-R2a-SM-CMKH5 40-49 years, male 45.6
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 43.6
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 43.2
GTEX-1EKGG-0011-R2a-SM-CE6R8 60-69 years, male 43.1
GTEX-1F6I4-0011-R2a-SM-CL536 60-69 years, male 42.9
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 71.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 71.4
FF:10158-103A5 76 years, female 71.4

MIDBRAIN - Pig RNA-seqi
Average nTPM 27.5
Pig sample Sample description nTPM
Substantia nigra
nTPM: 27.4
Samples: 4

Max nTPM: 34.2
Min nTPM: 23.1
Sample A Female 34.2
Sample B Female 24.5
Sample C Male 27.7
Sample D Male 23.1
Midbrain
nTPM: 27.5
Samples: 4

Max nTPM: 30.4
Min nTPM: 23.8
Sample A Female 28.0
Sample B Female 27.8
Sample C Male 30.4
Sample D Male 23.8
Periaqueductal gray
nTPM: 22.4
Samples: 3

Max nTPM: 22.7
Min nTPM: 22.0
Sample B Female 22.7
Sample C Male 22.5
Sample D Male 22.0
Superior colliculi
nTPM: 26.3
Samples: 4

Max nTPM: 28.9
Min nTPM: 22.2
Sample A Female 27.5
Sample B Female 22.2
Sample C Male 28.9
Sample D Male 26.7

MIDBRAIN - Mouse RNA-seqi
Average nTPM 12.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 12.2
Samples: 4

Max nTPM: 12.5
Min nTPM: 11.9
Sample A Male 12.1
Sample B Male 11.9
Sample C Female 12.5
Sample D Female 12.2

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.0
69134444 Antisense, RP_050321_02_H09, Mouse strain C57BL/6J (56 days, male) 0.0

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.


contact@proteinatlas.org