MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:746.1 nTPM
HPA Brain:716.0 nTPM
GTEx:746.1 nTPM
FANTOM5:62.9 Scaled Tags Per Million
Pig:337.4 nTPM
Mouse:266.6 nTPM
Allen mouse:9.6 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 716.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 616.9
2586 Male, age 75, left hemisphere 792.3
1870 Female, age 42, unknown 664.4
2411 Female, age 72, unknown 648.1
2666 Male, age 74, left hemisphere 644.9
1827 Male, age 72, unknown 634.2
2828 Female, age 72, unknown 628.3
1833 Male, age 53, unknown 567.4
1830 Male, age 51, unknown 552.9
2019 Male, age 18, unknown 529.0
2219 Male, age 76, both hemispheres 507.2
Dorsal raphe nucleus
nTPM: 646.5
2298 Female, age 72, unknown 727.6
2047 Male, age 72, unknown 649.4
2016 Female, age 72, unknown 638.9
2750 Male, age 76, both hemispheres 630.6
1828 Male, age 53, unknown 586.2
Inferior colliculus
nTPM: 624.0
2097 Female, age 72, unknown 664.3
1848 Female, age 42, unknown 626.8
1890 Male, age 53, unknown 618.7
2849 Male, age 72, unknown 586.2
Median raphe nucleus
nTPM: 589.0
2220 Male, age 76, midline 589.0
Periaquaductal grey, anterior
nTPM: 716.0
2502 Female, age 75, unknown 838.7
1947 Male, age 18, unknown 696.9
1795 Male, age 51, unknown 612.5
Periaquaductal grey, dorsal
nTPM: 593.5
1840 Male, age 53, unknown 706.5
2464 Female, age 72, unknown 590.6
1831 Male, age 72, unknown 578.4
2850 Male, age 76, both hemispheres 498.4
Periaquaductal grey, lateral
nTPM: 551.0
2053 Male, age 18, unknown 685.0
2272 Male, age 74, both hemispheres 494.2
2140 Male, age 76, both hemispheres 473.8
Pretectal area
nTPM: 576.9
1816 Male, age 51, unknown 612.8
2316 Male, age 76, right hemisphere 608.9
2825 Male, age 18, unknown 606.0
2224 Female, age 72, unknown 605.8
1817 Female, age 42, unknown 595.0
2407 Male, age 75, both hemispheres 590.8
2007 Male, age 72, unknown 589.1
1815 Male, age 53, unknown 586.3
1944 Female, age 72, unknown 542.6
2273 Male, age 74, both hemispheres 513.3
2667 Female, age 75, unknown 495.7
Red nucleus
nTPM: 628.8
1821 Female, age 72, unknown 708.6
2503 Female, age 72, unknown 703.4
2584 Male, age 75, left hemisphere 700.3
2769 Male, age 72, unknown 676.6
1865 Male, age 51, unknown 653.7
1904 Male, age 53, unknown 647.9
2227 Male, age 72, unknown 646.7
2588 Male, age 74, left hemisphere 595.6
2725 Female, age 75, unknown 585.5
1954 Female, age 42, unknown 583.9
2785 Male, age 18, unknown 535.5
2823 Male, age 76, right hemisphere 508.0
Substantia nigra
nTPM: 672.3
1851 Male, age 51, unknown 812.5
2665 Male, age 74, both hemispheres 725.0
1916 Female, age 42, unknown 697.0
2590 Female, age 75, unknown 688.9
2699 Male, age 18, unknown 678.8
2241 Male, age 72, unknown 644.4
1889 Female, age 72, unknown 629.0
2409 Female, age 72, unknown 622.6
1941 Male, age 53, unknown 613.6
2583 Male, age 75, right hemisphere 611.2
Superior colliculus
nTPM: 626.1
2664 Male, age 75, both hemispheres 750.5
2587 Male, age 74, left hemisphere 708.0
2261 Male, age 18, unknown 638.2
2668 Female, age 75, unknown 636.4
1839 Male, age 51, unknown 622.8
1796 Male, age 53, unknown 608.0
1913 Female, age 42, unknown 604.3
1995 Male, age 72, unknown 587.5
1895 Male, age 76, right hemisphere 557.5
2087 Female, age 72, unknown 548.3
Ventral tegmental area
nTPM: 668.9
2410 Female, age 72, unknown 727.2
2021 Male, age 53, unknown 705.6
1915 Female, age 42, unknown 690.9
2223 Female, age 72, unknown 658.9
1942 Male, age 51, unknown 635.1
2218 Male, age 76, both hemispheres 595.7

MIDBRAIN - GTEx RNA-seqi
Average nTPM 746.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 746.1
Samples: 139

Max nTPM: 1413.6
Min nTPM: 341.6
Std nTPM: 184.3
Median nTPM: 722.3
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 1413.6
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 1282.4
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 1242.1
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 1240.3
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 1182.7
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 1117.5
GTEX-1HR98-0011-R2a-SM-ARL7A 60-69 years, male 1116.5
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 1089.4
GTEX-1EU9M-0011-R2b-SM-9QEH7 60-69 years, male 1021.1
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 1003.2
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 997.2
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 62.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 62.9
FF:10158-103A5 76 years, female 62.9

MIDBRAIN - Pig RNA-seqi
Average nTPM 337.4
Pig sample Sample description nTPM
Substantia nigra
nTPM: 274.2
Samples: 4

Max nTPM: 339.5
Min nTPM: 225.7
Sample A Female 339.5
Sample B Female 256.2
Sample C Male 275.4
Sample D Male 225.7
Midbrain
nTPM: 318.4
Samples: 4

Max nTPM: 345.4
Min nTPM: 289.4
Sample A Female 334.8
Sample B Female 289.4
Sample C Male 345.4
Sample D Male 303.8
Periaqueductal gray
nTPM: 240.2
Samples: 3

Max nTPM: 273.5
Min nTPM: 208.3
Sample B Female 238.8
Sample C Male 273.5
Sample D Male 208.3
Superior colliculi
nTPM: 337.4
Samples: 4

Max nTPM: 368.4
Min nTPM: 289.1
Sample A Female 368.4
Sample B Female 359.0
Sample C Male 332.9
Sample D Male 289.1

MIDBRAIN - Mouse RNA-seqi
Average nTPM 266.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 266.6
Samples: 4

Max nTPM: 291.2
Min nTPM: 231.5
Sample A Male 291.2
Sample B Male 258.6
Sample C Female 231.5
Sample D Female 285.1

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 9.6
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 9.6
69818299 Antisense, RP_050510_04_G12, Mouse strain C57BL/6J (56 days, male) 10.0
74882810 Antisense, RP_060315_04_H02, Mouse strain C57BL/6J (56 days, male) 9.2

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