MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:6.8 nTPM
HPA Brain:43.5 nTPM
GTEx:6.8 nTPM
FANTOM5:36.5 Scaled Tags Per Million
Pig:14.2 nTPM

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 43.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 39.9
1830 Male, age 51, unknown 50.8
1833 Male, age 53, unknown 47.6
2411 Female, age 72, unknown 43.9
2219 Male, age 76, both hemispheres 42.6
1827 Male, age 72, unknown 38.1
1870 Female, age 42, unknown 37.2
2019 Male, age 18, unknown 36.8
2828 Female, age 72, unknown 36.6
2666 Male, age 74, left hemisphere 33.5
2586 Male, age 75, left hemisphere 31.8
Dorsal raphe nucleus
nTPM: 38.0
2750 Male, age 76, both hemispheres 43.9
2016 Female, age 72, unknown 39.9
2047 Male, age 72, unknown 36.8
1828 Male, age 53, unknown 35.5
2298 Female, age 72, unknown 33.9
Inferior colliculus
nTPM: 37.8
2849 Male, age 72, unknown 40.4
1890 Male, age 53, unknown 37.8
1848 Female, age 42, unknown 37.5
2097 Female, age 72, unknown 35.4
Median raphe nucleus
nTPM: 39.6
2220 Male, age 76, midline 39.6
Periaquaductal grey, anterior
nTPM: 34.4
1947 Male, age 18, unknown 38.1
1795 Male, age 51, unknown 33.3
2502 Female, age 75, unknown 31.8
Periaquaductal grey, dorsal
nTPM: 39.5
2464 Female, age 72, unknown 42.0
2850 Male, age 76, both hemispheres 41.3
1831 Male, age 72, unknown 40.4
1840 Male, age 53, unknown 34.3
Periaquaductal grey, lateral
nTPM: 39.2
2053 Male, age 18, unknown 40.9
2272 Male, age 74, both hemispheres 40.2
2140 Male, age 76, both hemispheres 36.6
Pretectal area
nTPM: 37.0
2316 Male, age 76, right hemisphere 43.5
2273 Male, age 74, both hemispheres 41.4
2407 Male, age 75, both hemispheres 41.1
2825 Male, age 18, unknown 39.0
2224 Female, age 72, unknown 38.2
2667 Female, age 75, unknown 38.0
1815 Male, age 53, unknown 36.3
1817 Female, age 42, unknown 33.6
1944 Female, age 72, unknown 33.5
1816 Male, age 51, unknown 31.5
2007 Male, age 72, unknown 31.1
Red nucleus
nTPM: 43.5
2823 Male, age 76, right hemisphere 51.1
2725 Female, age 75, unknown 46.4
1904 Male, age 53, unknown 46.3
1954 Female, age 42, unknown 44.7
2227 Male, age 72, unknown 44.1
1865 Male, age 51, unknown 43.3
2503 Female, age 72, unknown 42.3
2769 Male, age 72, unknown 42.2
1821 Female, age 72, unknown 41.5
2785 Male, age 18, unknown 40.4
2588 Male, age 74, left hemisphere 40.0
2584 Male, age 75, left hemisphere 39.5
Substantia nigra
nTPM: 35.0
2583 Male, age 75, right hemisphere 38.0
2241 Male, age 72, unknown 37.7
2699 Male, age 18, unknown 37.6
1889 Female, age 72, unknown 36.9
2590 Female, age 75, unknown 36.4
1941 Male, age 53, unknown 35.5
2409 Female, age 72, unknown 33.2
2665 Male, age 74, both hemispheres 33.1
1851 Male, age 51, unknown 31.8
1916 Female, age 42, unknown 29.6
Superior colliculus
nTPM: 38.0
1913 Female, age 42, unknown 45.1
1895 Male, age 76, right hemisphere 44.2
1995 Male, age 72, unknown 40.5
1839 Male, age 51, unknown 38.4
2087 Female, age 72, unknown 37.5
2587 Male, age 74, left hemisphere 37.4
2668 Female, age 75, unknown 35.3
2664 Male, age 75, both hemispheres 34.8
1796 Male, age 53, unknown 33.9
2261 Male, age 18, unknown 32.9
Ventral tegmental area
nTPM: 38.1
2223 Female, age 72, unknown 40.5
2021 Male, age 53, unknown 40.1
2218 Male, age 76, both hemispheres 38.6
1942 Male, age 51, unknown 38.5
2410 Female, age 72, unknown 37.7
1915 Female, age 42, unknown 33.5

MIDBRAIN - GTEx RNA-seqi
Average nTPM 6.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 6.8
Samples: 139

Max nTPM: 12.5
Min nTPM: 3.4
Std nTPM: 1.8
Median nTPM: 6.5
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 12.5
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 12.0
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 11.8
GTEX-1I1GV-0011-R2a-SM-ARZLF 60-69 years, male 11.5
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 11.2
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 10.9
GTEX-1HR98-0011-R2a-SM-ARL7A 60-69 years, male 10.4
GTEX-1GTWX-0011-R2b-SM-ADEH5 60-69 years, male 10.3
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 10.2
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 10.0
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 9.9
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 36.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 36.5
FF:10158-103A5 76 years, female 36.5

MIDBRAIN - Pig RNA-seqi
Average nTPM 14.2
Pig sample Sample description nTPM
Substantia nigra
nTPM: 12.9
Samples: 4

Max nTPM: 13.9
Min nTPM: 11.7
Sample A Female 12.5
Sample B Female 13.4
Sample C Male 11.7
Sample D Male 13.9
Midbrain
nTPM: 13.4
Samples: 4

Max nTPM: 16.2
Min nTPM: 9.9
Sample A Female 15.2
Sample B Female 16.2
Sample C Male 9.9
Sample D Male 12.3
Periaqueductal gray
nTPM: 14.2
Samples: 3

Max nTPM: 15.2
Min nTPM: 12.8
Sample B Female 14.6
Sample C Male 12.8
Sample D Male 15.2
Superior colliculi
nTPM: 11.9
Samples: 4

Max nTPM: 14.2
Min nTPM: 10.7
Sample A Female 10.8
Sample B Female 14.2
Sample C Male 10.7
Sample D Male 11.7

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