MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:93.1 nTPM
HPA Brain:129.2 nTPM
GTEx:93.1 nTPM
FANTOM5:83.4 Scaled Tags Per Million
Pig:157.2 nTPM
Mouse:101.8 nTPM

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 129.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 125.2
2586 Male, age 75, left hemisphere 178.3
2666 Male, age 74, left hemisphere 134.7
2828 Female, age 72, unknown 130.1
2019 Male, age 18, unknown 125.9
1827 Male, age 72, unknown 122.4
1833 Male, age 53, unknown 115.4
1870 Female, age 42, unknown 114.5
1830 Male, age 51, unknown 111.5
2411 Female, age 72, unknown 110.5
2219 Male, age 76, both hemispheres 108.9
Dorsal raphe nucleus
nTPM: 111.7
2047 Male, age 72, unknown 116.5
1828 Male, age 53, unknown 115.8
2750 Male, age 76, both hemispheres 113.1
2298 Female, age 72, unknown 108.2
2016 Female, age 72, unknown 105.2
Inferior colliculus
nTPM: 109.5
2849 Male, age 72, unknown 116.8
1890 Male, age 53, unknown 111.6
1848 Female, age 42, unknown 109.0
2097 Female, age 72, unknown 100.8
Median raphe nucleus
nTPM: 113.9
2220 Male, age 76, midline 113.9
Periaquaductal grey, anterior
nTPM: 122.5
2502 Female, age 75, unknown 127.2
1795 Male, age 51, unknown 122.7
1947 Male, age 18, unknown 117.8
Periaquaductal grey, dorsal
nTPM: 107.0
2850 Male, age 76, both hemispheres 111.2
1840 Male, age 53, unknown 109.6
1831 Male, age 72, unknown 104.2
2464 Female, age 72, unknown 103.0
Periaquaductal grey, lateral
nTPM: 99.2
2140 Male, age 76, both hemispheres 102.2
2272 Male, age 74, both hemispheres 98.5
2053 Male, age 18, unknown 96.7
Pretectal area
nTPM: 116.7
1817 Female, age 42, unknown 140.6
1816 Male, age 51, unknown 137.6
2007 Male, age 72, unknown 131.1
1944 Female, age 72, unknown 130.7
1815 Male, age 53, unknown 127.3
2667 Female, age 75, unknown 121.1
2407 Male, age 75, both hemispheres 111.2
2825 Male, age 18, unknown 105.8
2224 Female, age 72, unknown 97.7
2273 Male, age 74, both hemispheres 94.4
2316 Male, age 76, right hemisphere 86.4
Red nucleus
nTPM: 121.5
2584 Male, age 75, left hemisphere 147.6
2785 Male, age 18, unknown 133.8
2588 Male, age 74, left hemisphere 126.1
2769 Male, age 72, unknown 124.0
1865 Male, age 51, unknown 122.7
1904 Male, age 53, unknown 120.1
1821 Female, age 72, unknown 117.4
2227 Male, age 72, unknown 116.9
1954 Female, age 42, unknown 114.5
2503 Female, age 72, unknown 114.5
2823 Male, age 76, right hemisphere 110.4
2725 Female, age 75, unknown 109.6
Substantia nigra
nTPM: 129.2
1916 Female, age 42, unknown 158.9
1851 Male, age 51, unknown 141.6
2665 Male, age 74, both hemispheres 140.3
2583 Male, age 75, right hemisphere 140.0
2699 Male, age 18, unknown 130.3
1941 Male, age 53, unknown 129.1
1889 Female, age 72, unknown 126.7
2590 Female, age 75, unknown 116.8
2241 Male, age 72, unknown 106.2
2409 Female, age 72, unknown 102.1
Superior colliculus
nTPM: 120.1
2664 Male, age 75, both hemispheres 154.4
2668 Female, age 75, unknown 132.6
2087 Female, age 72, unknown 123.7
2261 Male, age 18, unknown 121.4
1995 Male, age 72, unknown 119.4
1796 Male, age 53, unknown 118.1
1913 Female, age 42, unknown 117.2
1839 Male, age 51, unknown 109.8
2587 Male, age 74, left hemisphere 104.8
1895 Male, age 76, right hemisphere 99.8
Ventral tegmental area
nTPM: 121.2
2410 Female, age 72, unknown 134.9
1915 Female, age 42, unknown 127.3
2218 Male, age 76, both hemispheres 124.4
2223 Female, age 72, unknown 122.2
2021 Male, age 53, unknown 109.7
1942 Male, age 51, unknown 109.0

MIDBRAIN - GTEx RNA-seqi
Average nTPM 93.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 93.1
Samples: 139

Max nTPM: 170.3
Min nTPM: 54.8
Std nTPM: 14.4
Median nTPM: 92.1
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 170.3
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 138.4
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 128.2
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 123.6
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 122.7
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 121.4
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 118.9
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 116.3
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 113.4
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 112.7
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 112.5
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 83.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 83.4
FF:10158-103A5 76 years, female 83.4

MIDBRAIN - Pig RNA-seqi
Average nTPM 157.2
Pig sample Sample description nTPM
Substantia nigra
nTPM: 115.3
Samples: 4

Max nTPM: 142.2
Min nTPM: 86.7
Sample A Female 137.4
Sample B Female 95.0
Sample C Male 142.2
Sample D Male 86.7
Midbrain
nTPM: 157.2
Samples: 4

Max nTPM: 271.8
Min nTPM: 101.2
Sample A Female 127.8
Sample B Female 101.2
Sample C Male 271.8
Sample D Male 128.1
Periaqueductal gray
nTPM: 95.5
Samples: 3

Max nTPM: 117.3
Min nTPM: 83.4
Sample B Female 83.4
Sample C Male 117.3
Sample D Male 85.8
Superior colliculi
nTPM: 122.1
Samples: 4

Max nTPM: 138.6
Min nTPM: 92.8
Sample A Female 129.6
Sample B Female 92.8
Sample C Male 138.6
Sample D Male 127.5

MIDBRAIN - Mouse RNA-seqi
Average nTPM 101.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 101.8
Samples: 4

Max nTPM: 107.2
Min nTPM: 95.0
Sample A Male 102.5
Sample B Male 102.6
Sample C Female 95.0
Sample D Female 107.2

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