MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:36.2 nTPM
HPA Brain:92.7 nTPM
GTEx:36.2 nTPM
FANTOM5:26.5 Scaled Tags Per Million
Pig:74.6 nTPM
Mouse:90.2 nTPM
Allen mouse:11.2 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 92.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 83.7
2019 Male, age 18, unknown 121.1
2586 Male, age 75, left hemisphere 104.7
2666 Male, age 74, left hemisphere 102.0
2219 Male, age 76, both hemispheres 94.6
1827 Male, age 72, unknown 82.2
2828 Female, age 72, unknown 70.7
2411 Female, age 72, unknown 67.3
1833 Male, age 53, unknown 66.7
1830 Male, age 51, unknown 66.5
1870 Female, age 42, unknown 61.1
Dorsal raphe nucleus
nTPM: 65.7
1828 Male, age 53, unknown 78.8
2047 Male, age 72, unknown 73.5
2298 Female, age 72, unknown 64.8
2750 Male, age 76, both hemispheres 60.0
2016 Female, age 72, unknown 51.4
Inferior colliculus
nTPM: 85.8
2849 Male, age 72, unknown 91.9
1890 Male, age 53, unknown 85.8
1848 Female, age 42, unknown 84.0
2097 Female, age 72, unknown 81.8
Median raphe nucleus
nTPM: 69.0
2220 Male, age 76, midline 69.0
Periaquaductal grey, anterior
nTPM: 82.7
1795 Male, age 51, unknown 87.3
2502 Female, age 75, unknown 82.5
1947 Male, age 18, unknown 78.4
Periaquaductal grey, dorsal
nTPM: 65.7
2464 Female, age 72, unknown 70.3
1831 Male, age 72, unknown 65.6
1840 Male, age 53, unknown 64.2
2850 Male, age 76, both hemispheres 62.7
Periaquaductal grey, lateral
nTPM: 58.1
2140 Male, age 76, both hemispheres 63.1
2272 Male, age 74, both hemispheres 60.0
2053 Male, age 18, unknown 51.3
Pretectal area
nTPM: 92.7
2007 Male, age 72, unknown 137.2
1817 Female, age 42, unknown 127.7
1944 Female, age 72, unknown 122.8
1816 Male, age 51, unknown 120.3
1815 Male, age 53, unknown 91.4
2667 Female, age 75, unknown 89.1
2407 Male, age 75, both hemispheres 86.2
2224 Female, age 72, unknown 68.6
2316 Male, age 76, right hemisphere 61.3
2825 Male, age 18, unknown 61.2
2273 Male, age 74, both hemispheres 53.8
Red nucleus
nTPM: 73.8
2785 Male, age 18, unknown 112.6
2584 Male, age 75, left hemisphere 89.4
1821 Female, age 72, unknown 75.4
2588 Male, age 74, left hemisphere 75.0
2769 Male, age 72, unknown 74.3
2227 Male, age 72, unknown 71.6
2823 Male, age 76, right hemisphere 68.9
1954 Female, age 42, unknown 68.4
1865 Male, age 51, unknown 68.3
2503 Female, age 72, unknown 63.2
2725 Female, age 75, unknown 60.0
1904 Male, age 53, unknown 58.5
Substantia nigra
nTPM: 84.6
1941 Male, age 53, unknown 125.9
2665 Male, age 74, both hemispheres 108.6
1916 Female, age 42, unknown 107.0
1889 Female, age 72, unknown 102.1
1851 Male, age 51, unknown 84.0
2583 Male, age 75, right hemisphere 72.3
2699 Male, age 18, unknown 64.4
2241 Male, age 72, unknown 60.9
2409 Female, age 72, unknown 60.7
2590 Female, age 75, unknown 60.3
Superior colliculus
nTPM: 84.0
2668 Female, age 75, unknown 132.4
2087 Female, age 72, unknown 101.2
2664 Male, age 75, both hemispheres 98.2
1895 Male, age 76, right hemisphere 87.0
1839 Male, age 51, unknown 80.1
1796 Male, age 53, unknown 78.5
2261 Male, age 18, unknown 76.9
2587 Male, age 74, left hemisphere 69.2
1913 Female, age 42, unknown 59.5
1995 Male, age 72, unknown 57.0
Ventral tegmental area
nTPM: 70.8
2218 Male, age 76, both hemispheres 84.1
1915 Female, age 42, unknown 79.2
2410 Female, age 72, unknown 77.8
2223 Female, age 72, unknown 62.9
1942 Male, age 51, unknown 62.7
2021 Male, age 53, unknown 58.2

MIDBRAIN - GTEx RNA-seqi
Average nTPM 36.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 36.2
Samples: 139

Max nTPM: 157.5
Min nTPM: 12.5
Std nTPM: 19.1
Median nTPM: 31.1
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 157.5
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 118.3
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 85.6
GTEX-N7MS-0011-R2a-SM-2HML6 60-69 years, male 73.8
GTEX-RU72-0011-R2A-SM-2TF6O 50-59 years, female 70.8
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 70.0
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 63.8
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 62.9
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 62.2
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 60.5
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 60.2
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 26.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 26.5
FF:10158-103A5 76 years, female 26.5

MIDBRAIN - Pig RNA-seqi
Average nTPM 74.6
Pig sample Sample description nTPM
Substantia nigra
nTPM: 41.6
Samples: 4

Max nTPM: 60.4
Min nTPM: 24.8
Sample A Female 60.4
Sample B Female 27.6
Sample C Male 53.4
Sample D Male 24.8
Midbrain
nTPM: 62.3
Samples: 4

Max nTPM: 118.1
Min nTPM: 26.5
Sample A Female 26.5
Sample B Female 32.3
Sample C Male 118.1
Sample D Male 72.2
Periaqueductal gray
nTPM: 37.0
Samples: 3

Max nTPM: 44.3
Min nTPM: 32.1
Sample B Female 32.1
Sample C Male 44.3
Sample D Male 34.5
Superior colliculi
nTPM: 74.6
Samples: 4

Max nTPM: 106.9
Min nTPM: 37.4
Sample A Female 83.2
Sample B Female 37.4
Sample C Male 106.9
Sample D Male 70.8

MIDBRAIN - Mouse RNA-seqi
Average nTPM 90.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 90.2
Samples: 4

Max nTPM: 95.7
Min nTPM: 85.7
Sample A Male 95.7
Sample B Male 87.3
Sample C Female 85.7
Sample D Female 91.9

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 11.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 11.2
618 Antisense, RP_040324_01_B06, Mouse strain C57BL/6J (56 days, male) 11.2
619 Antisense, RP_040324_01_B06, Mouse strain C57BL/6J (56 days, male) 6.3

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.


contact@proteinatlas.org