MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:8.2 nTPM
HPA Brain:19.5 nTPM
GTEx:8.2 nTPM
FANTOM5:6.9 Scaled Tags Per Million
Pig:15.5 nTPM
Mouse:27.9 nTPM
Allen mouse:0.6 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 19.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 19.5
2586 Male, age 75, left hemisphere 28.4
2666 Male, age 74, left hemisphere 23.3
2019 Male, age 18, unknown 19.9
1827 Male, age 72, unknown 19.1
2828 Female, age 72, unknown 18.9
2219 Male, age 76, both hemispheres 18.5
2411 Female, age 72, unknown 18.1
1870 Female, age 42, unknown 16.7
1833 Male, age 53, unknown 16.1
1830 Male, age 51, unknown 16.0
Dorsal raphe nucleus
nTPM: 15.1
1828 Male, age 53, unknown 16.8
2750 Male, age 76, both hemispheres 15.2
2298 Female, age 72, unknown 15.1
2047 Male, age 72, unknown 14.8
2016 Female, age 72, unknown 13.7
Inferior colliculus
nTPM: 16.3
1890 Male, age 53, unknown 16.8
2097 Female, age 72, unknown 16.7
1848 Female, age 42, unknown 16.0
2849 Male, age 72, unknown 15.8
Median raphe nucleus
nTPM: 14.2
2220 Male, age 76, midline 14.2
Periaquaductal grey, anterior
nTPM: 19.3
2502 Female, age 75, unknown 21.2
1795 Male, age 51, unknown 19.5
1947 Male, age 18, unknown 17.2
Periaquaductal grey, dorsal
nTPM: 14.1
2464 Female, age 72, unknown 15.9
1831 Male, age 72, unknown 14.7
1840 Male, age 53, unknown 14.1
2850 Male, age 76, both hemispheres 11.6
Periaquaductal grey, lateral
nTPM: 13.7
2053 Male, age 18, unknown 14.8
2272 Male, age 74, both hemispheres 13.9
2140 Male, age 76, both hemispheres 12.2
Pretectal area
nTPM: 18.3
1816 Male, age 51, unknown 24.0
2007 Male, age 72, unknown 22.3
1817 Female, age 42, unknown 21.4
2407 Male, age 75, both hemispheres 20.6
1815 Male, age 53, unknown 19.7
1944 Female, age 72, unknown 18.5
2667 Female, age 75, unknown 18.4
2825 Male, age 18, unknown 16.2
2273 Male, age 74, both hemispheres 13.9
2224 Female, age 72, unknown 13.6
2316 Male, age 76, right hemisphere 12.9
Red nucleus
nTPM: 19.5
2584 Male, age 75, left hemisphere 23.9
2785 Male, age 18, unknown 21.7
2769 Male, age 72, unknown 21.1
1865 Male, age 51, unknown 20.4
2227 Male, age 72, unknown 20.0
2588 Male, age 74, left hemisphere 20.0
1821 Female, age 72, unknown 19.4
1904 Male, age 53, unknown 18.7
2503 Female, age 72, unknown 18.6
1954 Female, age 42, unknown 18.0
2725 Female, age 75, unknown 16.5
2823 Male, age 76, right hemisphere 15.6
Substantia nigra
nTPM: 17.2
2583 Male, age 75, right hemisphere 21.8
1889 Female, age 72, unknown 19.1
1916 Female, age 42, unknown 18.6
1941 Male, age 53, unknown 18.5
2665 Male, age 74, both hemispheres 18.3
1851 Male, age 51, unknown 17.5
2699 Male, age 18, unknown 15.6
2590 Female, age 75, unknown 15.5
2409 Female, age 72, unknown 14.7
2241 Male, age 72, unknown 12.5
Superior colliculus
nTPM: 18.6
2664 Male, age 75, both hemispheres 22.5
2668 Female, age 75, unknown 21.1
2261 Male, age 18, unknown 19.7
2087 Female, age 72, unknown 19.2
1796 Male, age 53, unknown 18.7
1995 Male, age 72, unknown 18.1
1913 Female, age 42, unknown 17.9
2587 Male, age 74, left hemisphere 16.7
1839 Male, age 51, unknown 16.6
1895 Male, age 76, right hemisphere 15.2
Ventral tegmental area
nTPM: 16.7
2223 Female, age 72, unknown 19.5
2410 Female, age 72, unknown 18.0
1915 Female, age 42, unknown 16.6
2218 Male, age 76, both hemispheres 16.1
1942 Male, age 51, unknown 15.1
2021 Male, age 53, unknown 14.8

MIDBRAIN - GTEx RNA-seqi
Average nTPM 8.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 8.2
Samples: 139

Max nTPM: 19.8
Min nTPM: 4.3
Std nTPM: 2.3
Median nTPM: 7.8
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 19.8
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 15.3
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 15.2
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 15.2
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 15.2
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 13.8
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 13.0
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 12.8
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 12.2
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 12.0
GTEX-13N2G-0011-R2a-SM-5MR4Q 60-69 years, male 11.3
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 6.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 6.9
FF:10158-103A5 76 years, female 6.9

MIDBRAIN - Pig RNA-seqi
Average nTPM 15.5
Pig sample Sample description nTPM
Substantia nigra
nTPM: 14.1
Samples: 4

Max nTPM: 15.7
Min nTPM: 11.6
Sample A Female 15.2
Sample B Female 11.6
Sample C Male 13.7
Sample D Male 15.7
Midbrain
nTPM: 15.5
Samples: 4

Max nTPM: 18.2
Min nTPM: 12.5
Sample A Female 18.2
Sample B Female 12.5
Sample C Male 16.1
Sample D Male 15.3
Periaqueductal gray
nTPM: 12.0
Samples: 3

Max nTPM: 12.1
Min nTPM: 11.7
Sample B Female 12.1
Sample C Male 11.7
Sample D Male 12.1
Superior colliculi
nTPM: 15.3
Samples: 4

Max nTPM: 16.6
Min nTPM: 12.6
Sample A Female 16.4
Sample B Female 12.6
Sample C Male 15.7
Sample D Male 16.6

MIDBRAIN - Mouse RNA-seqi
Average nTPM 27.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 27.9
Samples: 4

Max nTPM: 29.3
Min nTPM: 25.5
Sample A Male 28.7
Sample B Male 25.5
Sample C Female 27.9
Sample D Female 29.3

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.6
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.6
75695651 Antisense, RP_060518_04_C02, Mouse strain C57BL/6J (56 days, male) 0.6

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