MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:11.5 nTPM
HPA Brain:24.8 nTPM
GTEx:11.5 nTPM
FANTOM5:21.0 Scaled Tags Per Million
Pig:12.6 nTPM
Mouse:14.0 nTPM
Allen mouse:0.3 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 24.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 24.2
2019 Male, age 18, unknown 28.0
2586 Male, age 75, left hemisphere 25.9
2666 Male, age 74, left hemisphere 25.6
2411 Female, age 72, unknown 24.2
1827 Male, age 72, unknown 23.8
1830 Male, age 51, unknown 23.5
1833 Male, age 53, unknown 23.3
1870 Female, age 42, unknown 22.8
2828 Female, age 72, unknown 22.4
2219 Male, age 76, both hemispheres 22.0
Dorsal raphe nucleus
nTPM: 22.7
1828 Male, age 53, unknown 24.3
2047 Male, age 72, unknown 23.3
2016 Female, age 72, unknown 22.2
2298 Female, age 72, unknown 22.2
2750 Male, age 76, both hemispheres 21.5
Inferior colliculus
nTPM: 23.9
2849 Male, age 72, unknown 26.3
2097 Female, age 72, unknown 24.7
1890 Male, age 53, unknown 22.8
1848 Female, age 42, unknown 21.9
Median raphe nucleus
nTPM: 24.8
2220 Male, age 76, midline 24.8
Periaquaductal grey, anterior
nTPM: 23.8
1795 Male, age 51, unknown 24.0
2502 Female, age 75, unknown 23.8
1947 Male, age 18, unknown 23.5
Periaquaductal grey, dorsal
nTPM: 21.3
2464 Female, age 72, unknown 22.2
1831 Male, age 72, unknown 21.1
2850 Male, age 76, both hemispheres 21.1
1840 Male, age 53, unknown 20.6
Periaquaductal grey, lateral
nTPM: 21.0
2053 Male, age 18, unknown 22.6
2140 Male, age 76, both hemispheres 22.4
2272 Male, age 74, both hemispheres 17.9
Pretectal area
nTPM: 24.8
2007 Male, age 72, unknown 29.8
1817 Female, age 42, unknown 27.4
2407 Male, age 75, both hemispheres 27.2
1944 Female, age 72, unknown 25.6
1816 Male, age 51, unknown 25.1
1815 Male, age 53, unknown 24.9
2224 Female, age 72, unknown 24.1
2316 Male, age 76, right hemisphere 24.0
2667 Female, age 75, unknown 23.1
2825 Male, age 18, unknown 22.3
2273 Male, age 74, both hemispheres 19.3
Red nucleus
nTPM: 23.1
2584 Male, age 75, left hemisphere 28.4
2785 Male, age 18, unknown 24.7
2588 Male, age 74, left hemisphere 23.9
1821 Female, age 72, unknown 23.7
2725 Female, age 75, unknown 23.6
1954 Female, age 42, unknown 23.3
1865 Male, age 51, unknown 22.7
1904 Male, age 53, unknown 22.4
2823 Male, age 76, right hemisphere 22.3
2227 Male, age 72, unknown 21.8
2769 Male, age 72, unknown 21.0
2503 Female, age 72, unknown 19.4
Substantia nigra
nTPM: 23.6
2409 Female, age 72, unknown 32.9
2665 Male, age 74, both hemispheres 24.5
1916 Female, age 42, unknown 24.1
2590 Female, age 75, unknown 23.7
2583 Male, age 75, right hemisphere 22.7
1941 Male, age 53, unknown 22.6
1851 Male, age 51, unknown 22.5
1889 Female, age 72, unknown 21.9
2241 Male, age 72, unknown 21.4
2699 Male, age 18, unknown 19.8
Superior colliculus
nTPM: 23.7
2664 Male, age 75, both hemispheres 25.8
1796 Male, age 53, unknown 25.5
1839 Male, age 51, unknown 25.3
2668 Female, age 75, unknown 24.2
2087 Female, age 72, unknown 23.5
1913 Female, age 42, unknown 23.3
2261 Male, age 18, unknown 23.0
1895 Male, age 76, right hemisphere 22.6
1995 Male, age 72, unknown 22.1
2587 Male, age 74, left hemisphere 21.4
Ventral tegmental area
nTPM: 21.7
2218 Male, age 76, both hemispheres 23.0
1915 Female, age 42, unknown 22.2
2021 Male, age 53, unknown 22.2
1942 Male, age 51, unknown 21.4
2223 Female, age 72, unknown 21.4
2410 Female, age 72, unknown 20.1

MIDBRAIN - GTEx RNA-seqi
Average nTPM 11.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 11.5
Samples: 139

Max nTPM: 20.6
Min nTPM: 5.7
Std nTPM: 2.7
Median nTPM: 11.2
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 20.6
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 20.4
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 20.0
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 19.8
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 17.5
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 16.8
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 16.7
GTEX-14C5O-0011-R2a-SM-5ZZV2 60-69 years, male 16.4
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 16.0
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 16.0
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 15.8
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 21.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 21.0
FF:10158-103A5 76 years, female 21.0

MIDBRAIN - Pig RNA-seqi
Average nTPM 12.6
Pig sample Sample description nTPM
Substantia nigra
nTPM: 12.6
Samples: 4

Max nTPM: 13.7
Min nTPM: 11.3
Sample A Female 13.7
Sample B Female 11.3
Sample C Male 12.0
Sample D Male 13.3
Midbrain
nTPM: 11.5
Samples: 4

Max nTPM: 16.7
Min nTPM: 8.9
Sample A Female 16.7
Sample B Female 10.6
Sample C Male 9.8
Sample D Male 8.9
Periaqueductal gray
nTPM: 10.7
Samples: 3

Max nTPM: 11.4
Min nTPM: 10.2
Sample B Female 10.6
Sample C Male 11.4
Sample D Male 10.2
Superior colliculi
nTPM: 11.7
Samples: 4

Max nTPM: 12.5
Min nTPM: 11.1
Sample A Female 12.5
Sample B Female 11.6
Sample C Male 11.1
Sample D Male 11.6

MIDBRAIN - Mouse RNA-seqi
Average nTPM 14.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 14.1
Samples: 4

Max nTPM: 14.2
Min nTPM: 13.7
Sample A Male 14.2
Sample B Male 13.7
Sample C Female 14.2
Sample D Female 14.1

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.3
68445077 Antisense, RP_050111_02_F11, Mouse strain C57BL/6J (56 days, male) 0.3

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