MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:37.8 nTPM
HPA Brain:49.2 nTPM
GTEx:37.8 nTPM
FANTOM5:30.0 Scaled Tags Per Million
Pig:33.3 nTPM
Mouse:43.1 nTPM
Allen mouse:0.2 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 49.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 47.7
2586 Male, age 75, left hemisphere 62.0
1827 Male, age 72, unknown 51.2
2411 Female, age 72, unknown 51.1
2828 Female, age 72, unknown 48.7
2666 Male, age 74, left hemisphere 46.1
2019 Male, age 18, unknown 44.8
2219 Male, age 76, both hemispheres 44.1
1833 Male, age 53, unknown 43.7
1870 Female, age 42, unknown 43.7
1830 Male, age 51, unknown 42.1
Dorsal raphe nucleus
nTPM: 42.1
2298 Female, age 72, unknown 45.0
2047 Male, age 72, unknown 43.1
2016 Female, age 72, unknown 42.2
1828 Male, age 53, unknown 41.4
2750 Male, age 76, both hemispheres 38.6
Inferior colliculus
nTPM: 46.4
2849 Male, age 72, unknown 50.6
2097 Female, age 72, unknown 48.1
1848 Female, age 42, unknown 45.7
1890 Male, age 53, unknown 41.4
Median raphe nucleus
nTPM: 34.7
2220 Male, age 76, midline 34.7
Periaquaductal grey, anterior
nTPM: 49.2
2502 Female, age 75, unknown 53.5
1795 Male, age 51, unknown 48.6
1947 Male, age 18, unknown 45.6
Periaquaductal grey, dorsal
nTPM: 41.4
1840 Male, age 53, unknown 46.4
2464 Female, age 72, unknown 44.7
1831 Male, age 72, unknown 39.5
2850 Male, age 76, both hemispheres 35.0
Periaquaductal grey, lateral
nTPM: 38.7
2053 Male, age 18, unknown 41.4
2140 Male, age 76, both hemispheres 39.0
2272 Male, age 74, both hemispheres 35.7
Pretectal area
nTPM: 45.2
2007 Male, age 72, unknown 54.3
1817 Female, age 42, unknown 53.5
1816 Male, age 51, unknown 49.9
1815 Male, age 53, unknown 46.7
2825 Male, age 18, unknown 45.2
2667 Female, age 75, unknown 44.7
1944 Female, age 72, unknown 44.5
2407 Male, age 75, both hemispheres 43.6
2316 Male, age 76, right hemisphere 40.8
2224 Female, age 72, unknown 38.7
2273 Male, age 74, both hemispheres 35.4
Red nucleus
nTPM: 41.7
2584 Male, age 75, left hemisphere 48.3
2785 Male, age 18, unknown 47.4
2588 Male, age 74, left hemisphere 45.4
1821 Female, age 72, unknown 43.0
2769 Male, age 72, unknown 43.0
2227 Male, age 72, unknown 42.5
1954 Female, age 42, unknown 39.7
1865 Male, age 51, unknown 39.2
2725 Female, age 75, unknown 38.5
1904 Male, age 53, unknown 38.3
2503 Female, age 72, unknown 38.2
2823 Male, age 76, right hemisphere 37.1
Substantia nigra
nTPM: 41.3
1889 Female, age 72, unknown 45.3
1941 Male, age 53, unknown 45.2
2583 Male, age 75, right hemisphere 44.9
1916 Female, age 42, unknown 44.8
2665 Male, age 74, both hemispheres 44.6
1851 Male, age 51, unknown 41.3
2590 Female, age 75, unknown 40.1
2699 Male, age 18, unknown 37.7
2409 Female, age 72, unknown 37.1
2241 Male, age 72, unknown 32.2
Superior colliculus
nTPM: 46.2
2664 Male, age 75, both hemispheres 56.5
1796 Male, age 53, unknown 50.8
1839 Male, age 51, unknown 49.7
2668 Female, age 75, unknown 46.8
2261 Male, age 18, unknown 46.3
1895 Male, age 76, right hemisphere 46.0
2587 Male, age 74, left hemisphere 44.8
2087 Female, age 72, unknown 41.8
1913 Female, age 42, unknown 39.6
1995 Male, age 72, unknown 39.5
Ventral tegmental area
nTPM: 40.3
2410 Female, age 72, unknown 44.7
1915 Female, age 42, unknown 43.4
1942 Male, age 51, unknown 40.0
2223 Female, age 72, unknown 39.1
2021 Male, age 53, unknown 37.7
2218 Male, age 76, both hemispheres 36.9

MIDBRAIN - GTEx RNA-seqi
Average nTPM 37.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 37.8
Samples: 139

Max nTPM: 57.7
Min nTPM: 26.5
Std nTPM: 5.6
Median nTPM: 37.2
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 57.7
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 55.2
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 51.3
GTEX-RU72-0011-R2A-SM-2TF6O 50-59 years, female 50.8
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 48.9
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 48.7
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 48.3
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 47.6
GTEX-1E1VI-0011-R2a-SM-9QEGS 50-59 years, male 47.3
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 46.8
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 46.7
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 30.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 30.0
FF:10158-103A5 76 years, female 30.0

MIDBRAIN - Pig RNA-seqi
Average nTPM 33.3
Pig sample Sample description nTPM
Substantia nigra
nTPM: 24.1
Samples: 4

Max nTPM: 30.9
Min nTPM: 18.7
Sample A Female 30.9
Sample B Female 22.1
Sample C Male 24.7
Sample D Male 18.7
Midbrain
nTPM: 29.7
Samples: 4

Max nTPM: 38.7
Min nTPM: 24.2
Sample A Female 30.1
Sample B Female 24.2
Sample C Male 38.7
Sample D Male 25.6
Periaqueductal gray
nTPM: 21.1
Samples: 3

Max nTPM: 23.7
Min nTPM: 19.1
Sample B Female 20.6
Sample C Male 23.7
Sample D Male 19.1
Superior colliculi
nTPM: 33.3
Samples: 4

Max nTPM: 38.2
Min nTPM: 28.9
Sample A Female 35.9
Sample B Female 28.9
Sample C Male 38.2
Sample D Male 30.0

MIDBRAIN - Mouse RNA-seqi
Average nTPM 43.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 43.2
Samples: 4

Max nTPM: 50.6
Min nTPM: 36.5
Sample A Male 50.6
Sample B Male 41.2
Sample C Female 36.5
Sample D Female 44.3

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.2
634459 Antisense, RP_040914_01_A09, Mouse strain C57BL/6J (56 days, male) 0.2

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