MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:35.8 nTPM
HPA Brain:20.2 nTPM
GTEx:35.8 nTPM
FANTOM5:41.2 Scaled Tags Per Million
Pig:24.1 nTPM
Mouse:353.8 nTPM
Allen mouse:10.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 20.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 16.7
1830 Male, age 51, unknown 19.1
1870 Female, age 42, unknown 18.9
2586 Male, age 75, left hemisphere 18.9
2219 Male, age 76, both hemispheres 18.3
1833 Male, age 53, unknown 17.5
2019 Male, age 18, unknown 16.8
2411 Female, age 72, unknown 15.7
2666 Male, age 74, left hemisphere 14.7
2828 Female, age 72, unknown 13.8
1827 Male, age 72, unknown 13.7
Dorsal raphe nucleus
nTPM: 18.9
2298 Female, age 72, unknown 19.5
1828 Male, age 53, unknown 19.3
2047 Male, age 72, unknown 19.1
2750 Male, age 76, both hemispheres 19.0
2016 Female, age 72, unknown 17.4
Inferior colliculus
nTPM: 16.3
2849 Male, age 72, unknown 17.3
1890 Male, age 53, unknown 17.0
2097 Female, age 72, unknown 15.5
1848 Female, age 42, unknown 15.2
Median raphe nucleus
nTPM: 20.2
2220 Male, age 76, midline 20.2
Periaquaductal grey, anterior
nTPM: 15.4
1947 Male, age 18, unknown 17.2
1795 Male, age 51, unknown 14.8
2502 Female, age 75, unknown 14.1
Periaquaductal grey, dorsal
nTPM: 17.4
2850 Male, age 76, both hemispheres 18.7
1840 Male, age 53, unknown 17.4
1831 Male, age 72, unknown 16.9
2464 Female, age 72, unknown 16.8
Periaquaductal grey, lateral
nTPM: 18.0
2140 Male, age 76, both hemispheres 20.2
2272 Male, age 74, both hemispheres 18.4
2053 Male, age 18, unknown 15.4
Pretectal area
nTPM: 16.3
2224 Female, age 72, unknown 18.0
2667 Female, age 75, unknown 17.8
2316 Male, age 76, right hemisphere 17.2
2273 Male, age 74, both hemispheres 17.1
1815 Male, age 53, unknown 16.4
1817 Female, age 42, unknown 16.4
2825 Male, age 18, unknown 16.2
2007 Male, age 72, unknown 15.9
2407 Male, age 75, both hemispheres 15.7
1816 Male, age 51, unknown 14.8
1944 Female, age 72, unknown 13.9
Red nucleus
nTPM: 19.3
1821 Female, age 72, unknown 22.9
2769 Male, age 72, unknown 22.4
2823 Male, age 76, right hemisphere 21.5
1904 Male, age 53, unknown 20.7
1865 Male, age 51, unknown 20.2
2227 Male, age 72, unknown 19.5
2503 Female, age 72, unknown 19.5
2725 Female, age 75, unknown 18.1
1954 Female, age 42, unknown 17.5
2785 Male, age 18, unknown 17.5
2588 Male, age 74, left hemisphere 17.1
2584 Male, age 75, left hemisphere 14.2
Substantia nigra
nTPM: 18.0
2699 Male, age 18, unknown 22.1
2409 Female, age 72, unknown 21.9
1916 Female, age 42, unknown 20.7
1851 Male, age 51, unknown 19.1
1941 Male, age 53, unknown 16.9
2241 Male, age 72, unknown 16.6
2665 Male, age 74, both hemispheres 16.6
2590 Female, age 75, unknown 16.1
2583 Male, age 75, right hemisphere 15.2
1889 Female, age 72, unknown 14.8
Superior colliculus
nTPM: 15.7
2668 Female, age 75, unknown 18.1
1895 Male, age 76, right hemisphere 16.6
1995 Male, age 72, unknown 16.6
2664 Male, age 75, both hemispheres 16.4
1913 Female, age 42, unknown 16.2
2587 Male, age 74, left hemisphere 16.2
2087 Female, age 72, unknown 14.9
1796 Male, age 53, unknown 14.2
2261 Male, age 18, unknown 14.1
1839 Male, age 51, unknown 13.6
Ventral tegmental area
nTPM: 17.3
2223 Female, age 72, unknown 18.1
1915 Female, age 42, unknown 18.0
2218 Male, age 76, both hemispheres 17.4
1942 Male, age 51, unknown 17.2
2410 Female, age 72, unknown 16.7
2021 Male, age 53, unknown 16.2

MIDBRAIN - GTEx RNA-seqi
Average nTPM 35.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 35.8
Samples: 139

Max nTPM: 77.1
Min nTPM: 19.7
Std nTPM: 9.5
Median nTPM: 33.8
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 77.1
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 73.7
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 72.7
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 60.1
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 55.1
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 54.6
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 53.4
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 53.3
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 52.9
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 52.2
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 51.0
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 41.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 41.2
FF:10158-103A5 76 years, female 41.2

MIDBRAIN - Pig RNA-seqi
Average nTPM 24.1
Pig sample Sample description nTPM
Substantia nigra
nTPM: 23.0
Samples: 4

Max nTPM: 30.5
Min nTPM: 19.2
Sample A Female 30.5
Sample B Female 19.2
Sample C Male 22.3
Sample D Male 19.8
Midbrain
nTPM: 23.5
Samples: 4

Max nTPM: 33.5
Min nTPM: 18.5
Sample A Female 33.5
Sample B Female 20.8
Sample C Male 21.2
Sample D Male 18.5
Periaqueductal gray
nTPM: 19.2
Samples: 3

Max nTPM: 20.9
Min nTPM: 17.7
Sample B Female 19.0
Sample C Male 20.9
Sample D Male 17.7
Superior colliculi
nTPM: 24.2
Samples: 4

Max nTPM: 28.4
Min nTPM: 19.4
Sample A Female 27.8
Sample B Female 28.4
Sample C Male 19.4
Sample D Male 21.1

MIDBRAIN - Mouse RNA-seqi
Average nTPM 353.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 353.8
Samples: 4

Max nTPM: 367.1
Min nTPM: 335.7
Sample A Male 362.9
Sample B Male 349.6
Sample C Female 335.7
Sample D Female 367.1

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 10.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 10.1
68546452 Antisense, RP_050120_02_E06, Mouse strain C57BL/6J (56 days, male) 10.9
81599676 Antisense, RP_080103_01_B12, Mouse strain C57BL/6J (56 days, male) 9.3

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