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SLC35A4
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  • SLC35A4
PROTEIN SUMMARY SECTION OVERVIEW GENE INFORMATION RNA DATA ANTIBODY DATA
GENERAL INFORMATIONi

General description of the gene and the encoded protein(s) using information from HGNC and Ensembl, as well as predictions made by the Human Protein Atlas project.

Gene namei

Official gene symbol, which is typically a short form of the gene name, according to HGNC.

SLC35A4
Synonyms
Gene descriptioni

Full gene name according to HGNC.

Solute carrier family 35 member A4
Protein classi

Assigned HPA protein class(es) for the encoded protein(s).

Transporters
Predicted locationi

All transcripts of all genes have been analyzed regarding the location(s) of corresponding protein based on prediction methods for signal peptides and transmembrane regions.

  • Genes with at least one transcript predicted to encode a secreted protein, according to prediction methods or to UniProt location data, have been further annotated and classified with the aim to determine if the corresponding protein(s) are secreted or actually retained in intracellular locations or membrane-attached.

  • Remaining genes, with no transcript predicted to encode a secreted protein, will be assigned the prediction-based location(s).

The annotated location overrules the predicted location, so that a gene encoding a predicted secreted protein that has been annotated as intracellular will have intracellular as the final location.

Membrane
Protein evidence Evidence at protein level (all genes)
GENE INFORMATIONi

Gene information from Ensembl and Entrez, as well as links to available gene identifiers are displayed here. Information was retrieved from Ensembl if not indicated otherwise.

Chromosome 5
Cytoband q31.3
Chromosome location (bp) 140564446 - 140569100
Number of transcriptsi

Number of protein-coding transcripts from the gene as defined by Ensembl.

4
Ensembl ENSG00000176087 (version 109)
Entrez gene 113829
HGNC HGNC:20753
UniProt L0R6Q1 (UniProt - Inferred from homology), Q96G79 (UniProt - Evidence at protein level)
neXtProt NX_L0R6Q1, NX_Q96G79
GeneCards SLC35A4
Antibodypedia SLC35A4 antibodies


PROTEIN FUNCTION
Protein function (UniProt)i

Useful information about the protein provided by UniProt.

Mediates the transport of CDP-ribitol 1. Does not exhibit CMP-sialic acid, UDP-galactose and UDP-N-acetylglucosamine transport activity 2, 3. [Q96G79]
... show less
Biological process (UniProt)i

Keywords assigned by UniProt to proteins because they are involved in a particular biological process.

Sugar transport, Transport [Q96G79]
Gene summary (Entrez)i

Useful information about the gene from Entrez

Predicted to enable pyrimidine nucleotide-sugar transmembrane transporter activity. Involved in positive regulation of translation in response to stress. Predicted to be located in Golgi apparatus. Predicted to be integral component of Golgi membrane. [provided by Alliance of Genome Resources, Apr 2022]... show less
PROTEIN INFORMATIONi

The protein information section displays alternative protein-coding transcripts (splice variants) encoded by this gene according to the Ensembl database.

The ENSP identifier links to the Ensembl website protein summary, while the ENST identifier links to the Ensembl website transcript summary for the selected splice variant. The data in the UniProt column can be expanded to show links to all matching UniProt identifiers for this protein.

The protein classes assigned to this protein are shown if expanding the data in the protein class column. Parent protein classes are in bold font and subclasses are listed under the parent class.

The Gene Ontology terms assigned to this protein are listed if expanding the Gene ontology column. The length of the protein (amino acid residues according to Ensembl), molecular mass (kDalton), predicted signal peptide (according to a majority of the signal peptide predictors SPOCTOPUS, SignalP 4.0, and Phobius) and the number of predicted transmembrane region(s) (according to MDM) are also reported.
Splice variant SwissProt TrEMBL Protein class Gene ontology Length & mass Signal peptide
(predicted)
Transmembrane regions
(predicted)
SLC35A4-201
ENSP00000327133
ENST00000323146
Q96G79
[Direct mapping] Probable UDP-sugar transporter protein SLC35A4
Show all
Transporters
   Electrochemical Potential-driven transporters
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   TMHMM predicted membrane proteins
   # TM segments-based
   8TM proteins predicted by MDM
Mapped to neXtProt
   neXtProt - Evidence at protein level
Show all
GO:0000139 [Golgi membrane]
GO:0005515 [protein binding]
GO:0005794 [Golgi apparatus]
GO:0008643 [carbohydrate transport]
GO:0015165 [pyrimidine nucleotide-sugar transmembrane transporter activity]
GO:0016020 [membrane]
GO:0016021 [integral component of membrane]
GO:0090481 [pyrimidine nucleotide-sugar transmembrane transport]
Show all
324 aa
34.6 kDa
No 8
SLC35A4-202
ENSP00000424566
ENST00000514199
Q96G79
[Direct mapping] Probable UDP-sugar transporter protein SLC35A4
Show all
Transporters
   Electrochemical Potential-driven transporters
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   TMHMM predicted membrane proteins
   # TM segments-based
   8TM proteins predicted by MDM
Mapped to neXtProt
   neXtProt - Evidence at protein level
Show all
GO:0000139 [Golgi membrane]
GO:0005515 [protein binding]
GO:0005794 [Golgi apparatus]
GO:0008643 [carbohydrate transport]
GO:0015165 [pyrimidine nucleotide-sugar transmembrane transporter activity]
GO:0016020 [membrane]
GO:0016021 [integral component of membrane]
GO:0090481 [pyrimidine nucleotide-sugar transmembrane transport]
Show all
324 aa
34.6 kDa
No 8
SLC35A4-203
ENSP00000479255
ENST00000612662
Q96G79
[Direct mapping] Probable UDP-sugar transporter protein SLC35A4
Show all
Transporters
   Electrochemical Potential-driven transporters
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   TMHMM predicted membrane proteins
   # TM segments-based
   8TM proteins predicted by MDM
Mapped to neXtProt
   neXtProt - Evidence at protein level
Show all
GO:0000139 [Golgi membrane]
GO:0005515 [protein binding]
GO:0005794 [Golgi apparatus]
GO:0008643 [carbohydrate transport]
GO:0015165 [pyrimidine nucleotide-sugar transmembrane transporter activity]
GO:0016020 [membrane]
GO:0016021 [integral component of membrane]
GO:0090481 [pyrimidine nucleotide-sugar transmembrane transport]
Show all
324 aa
34.6 kDa
No 8
SLC35A4-204
ENSP00000485218
ENST00000623481
L0R6Q1
[Direct mapping] SLC35A4 upstream open reading frame protein
Show all
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   TMHMM predicted membrane proteins
   # TM segments-based
   1TM proteins predicted by MDM
Mapped to neXtProt
   neXtProt - Evidence at protein level
Show all
GO:0016020 [membrane]
GO:0032056 [positive regulation of translation in response to stress]
Show all
103 aa
11.1 kDa
No 1

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