HIPPOCAMPAL FORMATION - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:19.9 nTPM
HPA Brain:37.6 nTPM
GTEx:19.9 nTPM
FANTOM5:34.5 Scaled Tags Per Million
Pig:12.6 nTPM
Mouse:14.6 nTPM
Allen mouse:2.6 Expression energy

HIPPOCAMPAL FORMATION - Annotated protein expression
Pending normal tissue analysis

HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 37.6
Sample id Sample description nTPM
Hippocampus
nTPM: 36.8
2621 Female, age 67, right hemisphere 47.2
2148 Female, age 91, left hemisphere 39.0
2529 Female, age 94, left hemisphere 37.3
1898 Male, age 80, left hemisphere 33.5
1855 Male, age 76, left hemisphere 32.3
1911 Female, age 85, right hemisphere 31.6
Dentate gyrus
nTPM: 35.5
2531 Female, age 67, both hemispheres 44.2
2530 Female, age 94, left hemisphere 41.4
1927 Female, age 91, both hemispheres 37.9
2246 Female, age 85, both hemispheres 31.2
2528 Male, age 74, both hemispheres 31.2
2010 Male, age 76, both hemispheres 27.4
Entorhinal gyrus
nTPM: 36.5
2613 Female, age 94, left hemisphere 51.5
2764 Male, age 80, right hemisphere 40.3
2686 Male, age 75, right hemisphere 35.7
1787 Male, age 76, left hemisphere 33.1
1938 Female, age 85, left hemisphere 32.3
2117 Female, age 91, right hemisphere 26.1
Hippocampus, CA1
nTPM: 32.8
2749 Male, age 80, left hemisphere 43.3
2527 Male, age 74, both hemispheres 36.7
1873 Female, age 85, both hemispheres 32.7
2045 Male, age 76, both hemispheres 25.6
2082 Female, age 91, right hemisphere 25.4
Hippocampus, CA2
nTPM: 32.3
1963 Male, age 80, left hemisphere 37.8
2437 Female, age 94, left hemisphere 36.4
1892 Male, age 76, both hemispheres 35.4
2113 Female, age 91, right hemisphere 28.9
1940 Female, age 85, left hemisphere 28.3
2249 Male, age 74, both hemispheres 27.1
Hippocampus, CA3
nTPM: 37.6
2861 Female, age 67, both hemispheres 57.4
2620 Female, age 94, left hemisphere 50.7
2137 Male, age 80, left hemisphere 37.9
1867 Male, age 76, both hemispheres 28.1
1891 Female, age 85, both hemispheres 26.0
2436 Male, age 74, both hemispheres 25.1
Parahippocampal cortex
nTPM: 35.1
2245 Female, age 91, both hemispheres 43.1
2622 Female, age 67, right hemisphere 42.6
2532 Female, age 72, left hemisphere 37.1
2692 Male, age 74, both hemispheres 37.0
2250 Female, age 67, right hemisphere 35.8
2693 Female, age 94, both hemispheres 35.1
1990 Female, age 91, right hemisphere 32.4
1933 Female, age 85, both hemispheres 32.3
1850 Male, age 80, both hemispheres 29.9
2018 Male, age 76, both hemispheres 25.3
Perirhinal gyrus
nTPM: 32.9
1847 Female, age 91, left hemisphere 37.8
2521 Female, age 94, right hemisphere 34.5
1794 Male, age 80, right hemisphere 33.9
1841 Female, age 85, right hemisphere 31.2
2848 Male, age 76, right hemisphere 27.1
Subiculum
nTPM: 30.8
2619 Male, age 74, both hemispheres 37.8
2438 Female, age 94, left hemisphere 36.9
1901 Male, age 80, both hemispheres 30.0
1977 Female, age 85, both hemispheres 30.0
2729 Female, age 91, right hemisphere 26.5
2042 Male, age 76, both hemispheres 23.5

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 19.9
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 19.9
Samples: 197

Max nTPM: 57.7
Min nTPM: 3.9
Std nTPM: 8.7
Median nTPM: 19.5
GTEX-13PDP-0011-R1a-SM-5PNX5 60-69 years, male 57.7
GTEX-1HT8W-0011-R1b-SM-CJI3V 30-39 years, male 45.1
GTEX-NL3H-0011-R1a-SM-48TDJ 60-69 years, male 41.2
GTEX-13O3Q-0011-R1b-SM-5KM3L 50-59 years, male 41.0
GTEX-1GMR8-0011-R1b-SM-CJI2O 50-59 years, female 39.2
GTEX-145MH-0011-R1b-SM-5PNWY 50-59 years, male 36.5
GTEX-1F75A-0011-R1b-SM-CE6RA 50-59 years, male 36.1
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 35.7
GTEX-13FTY-0011-R1a-SM-5LZXE 40-49 years, female 34.9
GTEX-1H3VE-0011-R1a-SM-A9G1K 40-49 years, male 34.7
GTEX-13FLW-0011-R1b-SM-5LZX2 50-59 years, male 34.4
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 34.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 34.5
FF:10153-102I9 76 years, female 38.0
FF:10169-103B7 60 years, female 31.1

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 12.6
Pig sample Sample description nTPM
Subiculum
nTPM: 10.6
Samples: 4

Max nTPM: 12.7
Min nTPM: 8.1
Sample A Female 12.7
Sample B Female 8.1
Sample C Male 12.6
Sample D Male 8.8
Dorsal hippocampus
nTPM: 10.2
Samples: 4

Max nTPM: 11.8
Min nTPM: 9.3
Sample A Female 9.9
Sample B Female 9.3
Sample C Male 11.8
Sample D Male 9.9
Entorhinal cortex
nTPM: 12.6
Samples: 4

Max nTPM: 13.6
Min nTPM: 11.9
Sample A Female 12.6
Sample B Female 11.9
Sample C Male 13.6
Sample D Male 12.2
Ventral hippocampus
nTPM: 11.1
Samples: 4

Max nTPM: 14.7
Min nTPM: 8.9
Sample A Female 9.7
Sample B Female 8.9
Sample C Male 14.7
Sample D Male 11.0

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 14.6
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 14.7
Samples: 4

Max nTPM: 16.0
Min nTPM: 13.1
Sample A Male 16.0
Sample B Male 15.9
Sample C Female 13.6
Sample D Female 13.1
Hippocampal formation
nTPM: 14.5
Samples: 4

Max nTPM: 15.5
Min nTPM: 13.3
Sample A Male 13.3
Sample B Male 14.6
Sample C Female 14.4
Sample D Female 15.5

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 2.6
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 2.6
73423887 Antisense, RP_051019_03_B06, Mouse strain C57BL/6J (56 days, male) 2.6

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