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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
55.1
nTPM
Monaco:
55.3
nTPM
Schmiedel:
9.2
TPM
T-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max nTPM
55.1
HPA sample
nTPM
gdT-cell nTPM: 55.2
Samples: 6
Max nTPM: 73.8
Min nTPM: 36.6
P10809_1007
36.6
P10809_1022
64.2
P10809_1041
73.8
P10809_1060
41.1
P10809_1077
65.4
P10809_1098
49.8
MAIT T-cell nTPM: 30.3
Samples: 6
Max nTPM: 37.0
Min nTPM: 17.1
P10809_1006
17.1
P10809_1024
36.2
P10809_1043
37.0
P10809_1062
29.9
P10809_1083
33.3
P10809_1097
28.4
Memory CD4 T-cell nTPM: 12.2
Samples: 6
Max nTPM: 25.3
Min nTPM: 5.5
P10809_1014
5.5
P10809_1026
7.5
P10809_1045
11.3
P10809_1064
15.9
P10809_1086
25.3
P10809_1113
7.6
Memory CD8 T-cell nTPM: 40.5
Samples: 5
Max nTPM: 55.6
Min nTPM: 19.3
P10809_1012
19.3
P10809_1027
51.0
P10809_1046
55.6
P10809_1065
35.4
P10809_1111
41.1
Naive CD4 T-cell nTPM: 3.9
Samples: 6
Max nTPM: 8.5
Min nTPM: 1.7
P10809_1015
1.7
P10809_1030
5.2
P10809_1049
3.3
P10809_1068
2.2
P10809_1085
8.5
P10809_1112
2.7
Naive CD8 T-cell nTPM: 30.1
Samples: 6
Max nTPM: 56.5
Min nTPM: 4.4
P10809_1016
4.4
P10809_1031
32.6
P10809_1050
35.7
P10809_1069
35.1
P10809_1087
56.5
P10809_1110
16.5
T-reg nTPM: 9.3
Samples: 6
Max nTPM: 23.7
Min nTPM: 5.1
P10809_1018
9.1
P10809_1037
5.1
P10809_1056
6.3
P10809_1075
5.9
P10809_1094
23.7
P10809_1106
5.8
T-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max nTPM
55.3
Monaco sample
nTPM
Central memory CD8 T-cell nTPM: 12.7
Samples: 4
Max nTPM: 14.0
Min nTPM: 10.9
RHH5202_R3573
12.8
RHH5230_R3602
10.9
RHH5259_R3631
13.0
RHH5288_R3660
14.0
Effector memory CD8 T-cell nTPM: 24.4
Samples: 4
Max nTPM: 29.3
Min nTPM: 21.1
RHH5203_R3574
21.1
RHH5231_R3603
25.2
RHH5260_R3632
21.8
RHH5289_R3661
29.3
MAIT T-cell nTPM: 27.0
Samples: 4
Max nTPM: 34.3
Min nTPM: 18.8
RHH5233_R3605
34.3
RHH5205_R3576
18.8
RHH5262_R3634
24.6
RHH5297_R3663
30.2
Memory CD4 T-cell TFH nTPM: 4.6
Samples: 4
Max nTPM: 7.6
Min nTPM: 2.6
RHH5300_R3666
2.6
RHH5236_R3608
7.6
RHH5265_R3637
4.0
RHH5208_R3579
4.1
Memory CD4 T-cell Th1 nTPM: 8.1
Samples: 4
Max nTPM: 11.9
Min nTPM: 3.3
RHH5210_R3581
3.3
RHH5302_R3668
11.9
RHH5238_R3610
7.9
RHH5267_R3639
9.1
Memory CD4 T-cell Th1/Th17 nTPM: 13.4
Samples: 4
Max nTPM: 16.7
Min nTPM: 7.2
RHH5303_R3669
15.1
RHH5211_R3582
7.2
RHH5239_R3611
14.5
RHH5268_R3640
16.7
Memory CD4 T-cell Th17 nTPM: 6.2
Samples: 4
Max nTPM: 9.1
Min nTPM: 4.3
RHH5304_R3670
9.1
RHH5212_R3583
5.4
RHH5240_R3612
4.3
RHH5269_R3641
6.0
Memory CD4 T-cell Th2 nTPM: 6.3
Samples: 4
Max nTPM: 10.5
Min nTPM: 4.6
RHH5305_R3671
10.5
RHH5213_R3584
4.6
RHH5241_R3613
4.9
RHH5270_R3642
5.1
Naive CD4 T-cell nTPM: 2.9
Samples: 4
Max nTPM: 4.9
Min nTPM: 0.0
RHH5306_R3672
4.9
RHH5214_R3585
4.8
RHH5242_R3614
0.0
RHH5271_R3643
1.9
Naive CD8 T-cell nTPM: 3.0
Samples: 4
Max nTPM: 4.3
Min nTPM: 1.5
RHH5201_R3572
1.5
RHH5229_R3601
2.3
RHH5258_R3630
3.9
RHH5287_R3659
4.3
Non-Vd2 gdTCR nTPM: 55.0
Samples: 4
Max nTPM: 71.7
Min nTPM: 42.9
RHH5235_R3607
45.6
RHH5264_R3636
42.9
RHH5207_R3578
59.9
RHH5299_R3665
71.7
T-reg nTPM: 5.5
Samples: 4
Max nTPM: 9.1
Min nTPM: 2.8
RHH5301_R3667
9.1
RHH5237_R3609
3.0
RHH5266_R3638
2.8
RHH5209_R3580
7.0
Terminal effector memory CD4 T-cell nTPM: 21.4
Samples: 2
Max nTPM: 30.6
Min nTPM: 12.2
RHH5243_R3615
30.6
RHH5272_R3644
12.2
Terminal effector memory CD8 T-cell nTPM: 55.4
Samples: 4
Max nTPM: 76.8
Min nTPM: 39.5
RHH5232_R3604
53.5
RHH5204_R3575
76.8
RHH5261_R3633
51.6
RHH5296_R3662
39.5
Vd2 gdTCR nTPM: 32.7
Samples: 4
Max nTPM: 50.1
Min nTPM: 17.3
RHH5234_R3606
27.0
RHH5206_R3577
50.1
RHH5263_R3635
17.3
RHH5298_R3664
36.5
T-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
The Human Protein Atlas project is funded
