BASAL GANGLIA - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:28.0 nTPM
HPA Brain:57.6 nTPM
GTEx:28.0 nTPM
FANTOM5:50.3 Scaled Tags Per Million
Pig:60.8 nTPM
Mouse:47.2 nTPM
Allen mouse:13.8 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

CAUDATE - Antibody stainingi
Antibody HPA051159
Glial cells Low
Neuronal cells Medium



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 57.6
Sample id Sample description nTPM
Caudate nucleus
nTPM: 46.2
1781 Male, age 74, unknown 61.5
2290 Female, age 72, unknown 57.3
2481 Female, age 94, left hemisphere 54.2
2289 Male, age 61, right hemisphere 48.9
2288 Male, age 75, left hemisphere 47.5
1854 Male, age 80, left hemisphere 35.6
1857 Female, age 85, left hemisphere 33.8
2846 Female, age 79, unknown 30.8
Globus pallidus, externus
nTPM: 57.6
2646 Male, age 61, right hemisphere 64.5
2772 Female, age 79, unknown 61.2
1996 Male, age 80, right hemisphere 60.4
2567 Female, age 72, unknown 54.5
2395 Male, age 75, both hemispheres 47.6
Globus pallidus, internus
nTPM: 51.6
2287 Male, age 75, right hemisphere 57.2
2778 Female, age 91, both hemispheres 55.9
2483 Female, age 94, right hemisphere 54.1
2566 Female, age 72, unknown 51.2
2037 Male, age 80, right hemisphere 50.2
2111 Female, age 85, right hemisphere 46.5
1818 Male, age 74, unknown 46.3
Nucleus accumbens
nTPM: 42.0
2698 Female, age 72, unknown 52.8
1783 Male, age 74, unknown 52.7
2732 Male, age 80, right hemisphere 51.5
1806 Female, age 85, left hemisphere 50.3
2286 Male, age 75, left hemisphere 43.8
1856 Female, age 91, right hemisphere 29.8
2391 Female, age 94, left hemisphere 27.7
2824 Male, age 61, right hemisphere 27.7
Nucleus basalis of Meynert
nTPM: 45.1
2569 Male, age 61, both hemispheres 71.4
2484 Female, age 94, left hemisphere 46.0
2393 Male, age 80, right hemisphere 31.8
2821 Male, age 75, both hemispheres 31.2
Nucleus of the diagonal band
nTPM: 55.3
2775 Male, age 80, right hemisphere 66.1
1812 Female, age 91, both hemispheres 58.3
2195 Female, age 85, both hemispheres 57.6
1979 Male, age 74, unknown 47.8
2029 Male, age 61, right hemisphere 46.7
Putamen
nTPM: 40.6
2647 Male, age 75, left hemisphere 53.7
2489 Female, age 72, unknown 46.3
2482 Female, age 94, left hemisphere 41.3
1829 Male, age 74, unknown 40.9
1838 Male, age 80, right hemisphere 39.7
1937 Female, age 91, right hemisphere 37.6
2466 Female, age 79, unknown 24.5
Septal nuclei
nTPM: 53.9
2031 Female, age 72, unknown 67.4
1960 Male, age 74, unknown 63.3
2059 Female, age 85, both hemispheres 61.7
2009 Female, age 91, both hemispheres 52.1
2629 Female, age 94, right hemisphere 49.5
2199 Male, age 80, right hemisphere 45.5
2394 Male, age 61, left hemisphere 37.8
Stria terminalis, bed nucleus
nTPM: 49.0
2486 Female, age 94, both hemispheres 55.4
1974 Female, age 91, both hemispheres 55.3
2201 Male, age 74, unknown 36.4

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 28.0
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 24.5
Samples: 246

Max nTPM: 44.6
Min nTPM: 13.0
Std nTPM: 4.4
Median nTPM: 24.2
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 44.6
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 42.2
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 38.9
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 37.9
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 36.1
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 34.7
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 33.9
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 33.3
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 32.7
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 32.3
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 32.0
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 28.0
Samples: 246

Max nTPM: 40.2
Min nTPM: 11.5
Std nTPM: 5.1
Median nTPM: 28.5
GTEX-1CB4H-0011-R6b-SM-CKZNK 60-69 years, female 40.2
GTEX-147F4-0011-R6b-SM-5S2UP 50-59 years, male 39.8
GTEX-NL3H-0011-R6a-SM-2I3G8 60-69 years, male 38.9
GTEX-1EH9U-0011-R6a-SM-CJI2C 60-69 years, male 37.6
GTEX-12ZZZ-0011-R6b-SM-5EQ5B 60-69 years, male 37.1
GTEX-14BIM-0011-R6b-SM-5S2VB 60-69 years, female 37.1
GTEX-1JMLX-0011-R6b-SM-EXUT9 50-59 years, male 37.1
GTEX-13RTJ-0011-R6a-SM-5SI74 60-69 years, male 37.0
GTEX-1F75A-0011-R6b-SM-9QEHD 50-59 years, male 36.9
GTEX-WWYW-0011-R6A-SM-3NB3G 50-59 years, female 36.3
GTEX-N7MS-0011-R6a-SM-2HMJ4 60-69 years, male 36.2
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Brain - Putamen (basal ganglia)
Average nTPM: 24.1
Samples: 205

Max nTPM: 40.4
Min nTPM: 15.5
Std nTPM: 4.5
Median nTPM: 23.7
GTEX-1R46S-0011-R7b-SM-EXUTH 60-69 years, female 40.4
GTEX-1JJ6O-0011-R7b-SM-EXUTB 60-69 years, male 37.3
GTEX-1EH9U-0011-R7a-SM-9QEGU 60-69 years, male 36.8
GTEX-12ZZW-0011-R7a-SM-5DUWC 50-59 years, male 35.3
GTEX-1J8Q2-0011-R7a-SM-CKZPF 60-69 years, male 35.1
GTEX-13CZV-0011-R7b-SM-5LZXH 60-69 years, male 34.9
GTEX-1H1ZS-0011-R7a-SM-CL54P 70-79 years, male 34.8
GTEX-QDT8-0011-R7A-SM-32PKF 30-39 years, female 33.0
GTEX-12WSI-0011-R7b-SM-5GU78 50-59 years, male 32.5
GTEX-WWYW-0011-R7A-SM-3NB3H 50-59 years, female 32.5
GTEX-1HCU6-0011-R7b-SM-ARL77 60-69 years, female 31.8
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 50.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 41.1
FF:10164-103B2 76 years, female 41.1
Nucleus accumbens
Scaled Tags Per Million: 45.5
FF:10037-101F1 23-56 years, mixed 45.5
Putamen
Scaled Tags Per Million: 50.3
FF:10176-103C5 60 years, female 50.3
Globus pallidus
Scaled Tags Per Million: 36.6
FF:10175-103C4 60 years, female 38.4
FF:10161-103A8 76 years, female 34.8

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 60.8
Pig sample Sample description nTPM
Caudate
nTPM: 60.9
Samples: 4

Max nTPM: 74.7
Min nTPM: 38.1
Sample A Female 38.1
Sample B Female 74.7
Sample C Male 68.2
Sample D Male 62.4
Putamen
nTPM: 55.2
Samples: 4

Max nTPM: 68.8
Min nTPM: 34.0
Sample A Female 34.0
Sample B Female 65.0
Sample C Male 68.8
Sample D Male 53.1
Septum
nTPM: 34.4
Samples: 4

Max nTPM: 46.1
Min nTPM: 19.7
Sample A Female 44.4
Sample B Female 46.1
Sample C Male 27.3
Sample D Male 19.7
Ventral pallidum
nTPM: 43.0
Samples: 4

Max nTPM: 47.9
Min nTPM: 33.5
Sample A Female 44.7
Sample B Female 47.9
Sample C Male 33.5
Sample D Male 45.9

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 47.2
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 37.9
Samples: 4

Max nTPM: 39.7
Min nTPM: 35.5
Sample A Male 35.5
Sample B Male 38.5
Sample C Female 37.7
Sample D Female 39.7
Septum
nTPM: 47.3
Samples: 4

Max nTPM: 54.6
Min nTPM: 35.1
Sample A Male 35.1
Sample B Male 53.1
Sample C Female 46.2
Sample D Female 54.6
Ventral forebrain
nTPM: 31.5
Samples: 4

Max nTPM: 32.7
Min nTPM: 29.7
Sample A Male 29.7
Sample B Male 30.9
Sample C Female 32.6
Sample D Female 32.7

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 13.8
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 13.8
69288518 Antisense, RP_050407_01_A08, Mouse strain C57BL/6J (56 days, male) 13.8
Pallidum
Expression energy: 12.9
69288518 Antisense, RP_050407_01_A08, Mouse strain C57BL/6J (56 days, male) 12.9

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