BASAL GANGLIA - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:7.2 nTPM
HPA Brain:21.5 nTPM
GTEx:7.2 nTPM
FANTOM5:10.0 Scaled Tags Per Million
Pig:5.0 nTPM
Mouse:15.6 nTPM
Allen mouse:1.8 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 21.5
Sample id Sample description nTPM
Caudate nucleus
nTPM: 19.5
2846 Female, age 79, unknown 22.3
1854 Male, age 80, left hemisphere 20.9
2289 Male, age 61, right hemisphere 20.3
2290 Female, age 72, unknown 20.0
2481 Female, age 94, left hemisphere 19.4
2288 Male, age 75, left hemisphere 18.6
1857 Female, age 85, left hemisphere 18.2
1781 Male, age 74, unknown 15.9
Globus pallidus, externus
nTPM: 21.5
2395 Male, age 75, both hemispheres 26.3
2567 Female, age 72, unknown 23.8
2646 Male, age 61, right hemisphere 22.1
1996 Male, age 80, right hemisphere 19.2
2772 Female, age 79, unknown 16.2
Globus pallidus, internus
nTPM: 21.3
2111 Female, age 85, right hemisphere 27.6
2566 Female, age 72, unknown 25.1
2483 Female, age 94, right hemisphere 21.3
2778 Female, age 91, both hemispheres 21.2
2037 Male, age 80, right hemisphere 20.0
1818 Male, age 74, unknown 18.4
2287 Male, age 75, right hemisphere 15.3
Nucleus accumbens
nTPM: 19.7
1856 Female, age 91, right hemisphere 22.8
2391 Female, age 94, left hemisphere 21.1
2732 Male, age 80, right hemisphere 20.8
1783 Male, age 74, unknown 19.6
2286 Male, age 75, left hemisphere 19.6
1806 Female, age 85, left hemisphere 18.5
2698 Female, age 72, unknown 18.2
2824 Male, age 61, right hemisphere 17.3
Nucleus basalis of Meynert
nTPM: 21.1
2569 Male, age 61, both hemispheres 24.4
2484 Female, age 94, left hemisphere 20.9
2393 Male, age 80, right hemisphere 20.2
2821 Male, age 75, both hemispheres 18.7
Nucleus of the diagonal band
nTPM: 17.9
2029 Male, age 61, right hemisphere 19.7
1979 Male, age 74, unknown 18.2
1812 Female, age 91, both hemispheres 17.6
2195 Female, age 85, both hemispheres 17.1
2775 Male, age 80, right hemisphere 17.1
Putamen
nTPM: 21.3
2466 Female, age 79, unknown 27.9
2489 Female, age 72, unknown 22.8
1838 Male, age 80, right hemisphere 21.2
2647 Male, age 75, left hemisphere 20.6
1829 Male, age 74, unknown 19.6
2482 Female, age 94, left hemisphere 19.1
1937 Female, age 91, right hemisphere 17.6
Septal nuclei
nTPM: 18.9
2059 Female, age 85, both hemispheres 23.4
2199 Male, age 80, right hemisphere 21.6
1960 Male, age 74, unknown 19.9
2009 Female, age 91, both hemispheres 19.1
2394 Male, age 61, left hemisphere 18.8
2031 Female, age 72, unknown 17.5
2629 Female, age 94, right hemisphere 12.3
Stria terminalis, bed nucleus
nTPM: 20.0
2201 Male, age 74, unknown 20.9
1974 Female, age 91, both hemispheres 20.5
2486 Female, age 94, both hemispheres 18.5

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 7.2
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 7.0
Samples: 246

Max nTPM: 17.2
Min nTPM: 3.2
Std nTPM: 1.8
Median nTPM: 6.9
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 17.2
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 12.5
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 12.0
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 11.9
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 11.4
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 11.3
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 11.1
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 10.9
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 10.7
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 10.5
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 10.4
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 7.2
Samples: 246

Max nTPM: 13.5
Min nTPM: 2.9
Std nTPM: 1.9
Median nTPM: 6.9
GTEX-1F7RK-0011-R6b-SM-ARZMG 20-29 years, female 13.5
GTEX-13FLV-0011-R6a-SM-5KLZ4 50-59 years, male 12.8
GTEX-13QJC-0011-R6a-SM-5S2VI 60-69 years, female 12.6
GTEX-18464-0011-R6a-SM-731CA 50-59 years, male 12.4
GTEX-14JIY-0011-R6b-SM-68714 60-69 years, male 12.2
GTEX-12WSC-0011-R6b-SM-5LU99 50-59 years, male 11.9
GTEX-N7MS-0011-R6a-SM-2HMJ4 60-69 years, male 11.9
GTEX-13FHO-0011-R6b-SM-5LZX1 60-69 years, male 11.4
GTEX-1F6IF-0011-R6a-SM-9QEIO 60-69 years, male 11.0
GTEX-12584-0011-R6a-SM-5NQ7C 40-49 years, male 10.9
GTEX-1J8Q2-0011-R6a-SM-CKZPG 60-69 years, male 10.9
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Brain - Putamen (basal ganglia)
Average nTPM: 6.7
Samples: 205

Max nTPM: 12.1
Min nTPM: 2.7
Std nTPM: 1.8
Median nTPM: 6.4
GTEX-S7SE-0011-R7A-SM-2XCDI 50-59 years, male 12.1
GTEX-1IY9M-0011-R7a-SM-D4P49 60-69 years, male 11.2
GTEX-14PN4-0011-R7b-SM-69LQQ 50-59 years, male 11.0
GTEX-13JVG-0011-R7b-SM-5MR3Q 60-69 years, male 10.9
GTEX-11PRG-0011-R7a-SM-DNZZT 50-59 years, male 10.9
GTEX-12WSD-0011-R7b-SM-5PNWE 60-69 years, female 10.7
GTEX-N7MT-0011-R7a-SM-2I3FZ 60-69 years, female 10.6
GTEX-12WSC-0011-R7b-SM-5LU9L 50-59 years, male 10.5
GTEX-14PJM-0011-R7a-SM-6AJBX 50-59 years, female 10.4
GTEX-132Q8-0011-R7b-SM-5N9F1 60-69 years, male 10.3
GTEX-13QJC-0011-R7b-SM-5PNUM 60-69 years, female 10.2
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 10.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 10.0
FF:10164-103B2 76 years, female 10.0
Nucleus accumbens
Scaled Tags Per Million: 9.3
FF:10037-101F1 23-56 years, mixed 9.3
Putamen
Scaled Tags Per Million: 9.4
FF:10176-103C5 60 years, female 9.4
Globus pallidus
Scaled Tags Per Million: 7.3
FF:10161-103A8 76 years, female 8.4
FF:10175-103C4 60 years, female 6.2

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 5.0
Pig sample Sample description nTPM
Caudate
nTPM: 4.5
Samples: 4

Max nTPM: 5.4
Min nTPM: 3.3
Sample A Female 3.3
Sample B Female 5.4
Sample C Male 4.7
Sample D Male 4.4
Putamen
nTPM: 5.0
Samples: 4

Max nTPM: 6.1
Min nTPM: 4.4
Sample A Female 4.4
Sample B Female 4.5
Sample C Male 6.1
Sample D Male 5.0
Septum
nTPM: 3.9
Samples: 4

Max nTPM: 4.6
Min nTPM: 3.0
Sample A Female 4.3
Sample B Female 4.6
Sample C Male 3.6
Sample D Male 3.0
Ventral pallidum
nTPM: 4.4
Samples: 4

Max nTPM: 5.1
Min nTPM: 3.8
Sample A Female 3.8
Sample B Female 4.7
Sample C Male 5.1
Sample D Male 4.0

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 15.6
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 14.1
Samples: 4

Max nTPM: 15.2
Min nTPM: 13.2
Sample A Male 14.8
Sample B Male 15.2
Sample C Female 13.2
Sample D Female 13.2
Septum
nTPM: 15.1
Samples: 4

Max nTPM: 16.8
Min nTPM: 13.9
Sample A Male 16.8
Sample B Male 14.9
Sample C Female 14.6
Sample D Female 13.9
Ventral forebrain
nTPM: 15.7
Samples: 4

Max nTPM: 17.2
Min nTPM: 14.7
Sample A Male 14.7
Sample B Male 15.4
Sample C Female 17.2
Sample D Female 15.3

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 1.8
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 1.5
77800945 Antisense, RP_070219_01_B08, Mouse strain C57BL/6J (56 days, male) 1.5
Pallidum
Expression energy: 1.8
77800945 Antisense, RP_070219_01_B08, Mouse strain C57BL/6J (56 days, male) 1.8

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