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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
5.1
nTPM
Monaco:
20.9
nTPM
Schmiedel:
35.5
TPM
T-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max nTPM
5.1
HPA sample
nTPM
gdT-cell nTPM: 4.6
Samples: 6
Max nTPM: 5.5
Min nTPM: 3.2
P10809_1007
4.8
P10809_1022
4.0
P10809_1041
4.7
P10809_1060
3.2
P10809_1077
5.1
P10809_1098
5.5
MAIT T-cell nTPM: 4.0
Samples: 6
Max nTPM: 7.1
Min nTPM: 2.0
P10809_1006
3.1
P10809_1024
2.0
P10809_1043
4.7
P10809_1062
3.2
P10809_1083
7.1
P10809_1097
3.6
Memory CD4 T-cell nTPM: 4.4
Samples: 6
Max nTPM: 5.6
Min nTPM: 3.0
P10809_1014
3.7
P10809_1026
3.0
P10809_1045
4.1
P10809_1064
4.5
P10809_1086
5.4
P10809_1113
5.6
Memory CD8 T-cell nTPM: 4.7
Samples: 5
Max nTPM: 6.7
Min nTPM: 2.0
P10809_1012
2.0
P10809_1027
5.3
P10809_1046
4.0
P10809_1065
5.5
P10809_1111
6.7
Naive CD4 T-cell nTPM: 1.9
Samples: 6
Max nTPM: 3.3
Min nTPM: 0.9
P10809_1015
1.6
P10809_1030
1.6
P10809_1049
2.0
P10809_1068
0.9
P10809_1085
3.3
P10809_1112
2.2
Naive CD8 T-cell nTPM: 3.4
Samples: 6
Max nTPM: 7.3
Min nTPM: 0.8
P10809_1016
1.7
P10809_1031
0.8
P10809_1050
4.0
P10809_1069
4.2
P10809_1087
7.3
P10809_1110
2.6
T-reg nTPM: 5.2
Samples: 6
Max nTPM: 8.3
Min nTPM: 1.9
P10809_1018
4.7
P10809_1037
1.9
P10809_1056
6.9
P10809_1075
4.8
P10809_1094
4.3
P10809_1106
8.3
T-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max nTPM
20.9
Monaco sample
nTPM
Central memory CD8 T-cell nTPM: 14.9
Samples: 4
Max nTPM: 21.5
Min nTPM: 10.3
RHH5202_R3573
10.7
RHH5230_R3602
16.9
RHH5259_R3631
21.5
RHH5288_R3660
10.3
Effector memory CD8 T-cell nTPM: 20.5
Samples: 4
Max nTPM: 21.6
Min nTPM: 19.4
RHH5203_R3574
21.6
RHH5231_R3603
20.7
RHH5260_R3632
20.4
RHH5289_R3661
19.4
MAIT T-cell nTPM: 17.4
Samples: 4
Max nTPM: 22.8
Min nTPM: 14.3
RHH5233_R3605
22.8
RHH5205_R3576
14.3
RHH5262_R3634
14.5
RHH5297_R3663
17.8
Memory CD4 T-cell TFH nTPM: 11.6
Samples: 4
Max nTPM: 12.8
Min nTPM: 10.3
RHH5300_R3666
10.3
RHH5236_R3608
11.6
RHH5265_R3637
12.8
RHH5208_R3579
11.7
Memory CD4 T-cell Th1 nTPM: 11.7
Samples: 4
Max nTPM: 13.6
Min nTPM: 8.4
RHH5210_R3581
8.4
RHH5302_R3668
12.1
RHH5238_R3610
13.6
RHH5267_R3639
12.6
Memory CD4 T-cell Th1/Th17 nTPM: 11.4
Samples: 4
Max nTPM: 14.9
Min nTPM: 6.5
RHH5303_R3669
14.1
RHH5211_R3582
9.9
RHH5239_R3611
6.5
RHH5268_R3640
14.9
Memory CD4 T-cell Th17 nTPM: 14.8
Samples: 4
Max nTPM: 18.9
Min nTPM: 9.9
RHH5304_R3670
9.9
RHH5212_R3583
18.4
RHH5240_R3612
11.8
RHH5269_R3641
18.9
Memory CD4 T-cell Th2 nTPM: 9.6
Samples: 4
Max nTPM: 11.3
Min nTPM: 7.4
RHH5305_R3671
8.6
RHH5213_R3584
7.4
RHH5241_R3613
11.2
RHH5270_R3642
11.3
Naive CD4 T-cell nTPM: 5.8
Samples: 4
Max nTPM: 8.8
Min nTPM: 3.7
RHH5306_R3672
6.2
RHH5214_R3585
4.6
RHH5242_R3614
3.7
RHH5271_R3643
8.8
Naive CD8 T-cell nTPM: 7.1
Samples: 4
Max nTPM: 10.5
Min nTPM: 4.2
RHH5201_R3572
10.5
RHH5229_R3601
4.4
RHH5258_R3630
9.2
RHH5287_R3659
4.2
Non-Vd2 gdTCR nTPM: 14.8
Samples: 4
Max nTPM: 18.4
Min nTPM: 11.7
RHH5235_R3607
18.4
RHH5264_R3636
11.7
RHH5207_R3578
12.2
RHH5299_R3665
16.7
T-reg nTPM: 8.7
Samples: 4
Max nTPM: 9.8
Min nTPM: 7.6
RHH5301_R3667
9.0
RHH5237_R3609
8.3
RHH5266_R3638
9.8
RHH5209_R3580
7.6
Terminal effector memory CD4 T-cell nTPM: 16.2
Samples: 2
Max nTPM: 19.2
Min nTPM: 13.2
RHH5243_R3615
19.2
RHH5272_R3644
13.2
Terminal effector memory CD8 T-cell nTPM: 21.0
Samples: 4
Max nTPM: 28.5
Min nTPM: 14.8
RHH5232_R3604
23.5
RHH5204_R3575
28.5
RHH5261_R3633
14.8
RHH5296_R3662
17.0
Vd2 gdTCR nTPM: 12.9
Samples: 4
Max nTPM: 20.7
Min nTPM: 7.6
RHH5234_R3606
9.3
RHH5206_R3577
20.7
RHH5263_R3635
7.6
RHH5298_R3664
14.1
T-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
The Human Protein Atlas project is funded
