MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:68.5 nTPM
HPA Brain:55.8 nTPM
GTEx:68.5 nTPM
FANTOM5:1.9 Scaled Tags Per Million
Pig:47.5 nTPM
Mouse:60.7 nTPM
Allen mouse:5.4 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 55.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 16.1
1827 Male, age 72, unknown 29.4
1870 Female, age 42, unknown 22.4
2666 Male, age 74, left hemisphere 21.5
2411 Female, age 72, unknown 20.6
2828 Female, age 72, unknown 14.2
1833 Male, age 53, unknown 13.4
1830 Male, age 51, unknown 12.8
2586 Male, age 75, left hemisphere 12.6
2219 Male, age 76, both hemispheres 12.2
2019 Male, age 18, unknown 1.7
Dorsal raphe nucleus
nTPM: 31.2
2047 Male, age 72, unknown 58.6
2298 Female, age 72, unknown 45.7
2750 Male, age 76, both hemispheres 24.0
1828 Male, age 53, unknown 14.9
2016 Female, age 72, unknown 12.8
Inferior colliculus
nTPM: 22.9
2097 Female, age 72, unknown 39.4
2849 Male, age 72, unknown 25.9
1848 Female, age 42, unknown 17.2
1890 Male, age 53, unknown 8.9
Median raphe nucleus
nTPM: 29.9
2220 Male, age 76, midline 29.9
Periaquaductal grey, anterior
nTPM: 55.8
1947 Male, age 18, unknown 83.1
1795 Male, age 51, unknown 47.3
2502 Female, age 75, unknown 36.9
Periaquaductal grey, dorsal
nTPM: 20.7
1840 Male, age 53, unknown 30.5
2464 Female, age 72, unknown 18.1
2850 Male, age 76, both hemispheres 17.9
1831 Male, age 72, unknown 16.3
Periaquaductal grey, lateral
nTPM: 29.7
2053 Male, age 18, unknown 51.4
2140 Male, age 76, both hemispheres 20.7
2272 Male, age 74, both hemispheres 16.9
Pretectal area
nTPM: 21.6
2825 Male, age 18, unknown 57.7
2224 Female, age 72, unknown 44.1
1816 Male, age 51, unknown 24.1
2667 Female, age 75, unknown 22.4
2407 Male, age 75, both hemispheres 19.6
2273 Male, age 74, both hemispheres 18.8
1944 Female, age 72, unknown 15.7
1815 Male, age 53, unknown 14.8
2316 Male, age 76, right hemisphere 9.5
1817 Female, age 42, unknown 7.3
2007 Male, age 72, unknown 3.6
Red nucleus
nTPM: 11.6
2725 Female, age 75, unknown 18.2
1954 Female, age 42, unknown 16.8
1904 Male, age 53, unknown 14.4
2584 Male, age 75, left hemisphere 13.5
2769 Male, age 72, unknown 12.7
2503 Female, age 72, unknown 12.5
2588 Male, age 74, left hemisphere 12.0
1821 Female, age 72, unknown 10.8
2823 Male, age 76, right hemisphere 10.3
2227 Male, age 72, unknown 8.7
1865 Male, age 51, unknown 7.6
2785 Male, age 18, unknown 1.3
Substantia nigra
nTPM: 16.8
2241 Male, age 72, unknown 30.6
2665 Male, age 74, both hemispheres 23.3
2409 Female, age 72, unknown 19.2
2590 Female, age 75, unknown 17.8
1889 Female, age 72, unknown 15.8
2699 Male, age 18, unknown 14.5
1851 Male, age 51, unknown 14.3
1916 Female, age 42, unknown 13.8
1941 Male, age 53, unknown 13.1
2583 Male, age 75, right hemisphere 5.8
Superior colliculus
nTPM: 20.0
2261 Male, age 18, unknown 51.5
1796 Male, age 53, unknown 26.9
2664 Male, age 75, both hemispheres 24.3
2087 Female, age 72, unknown 20.6
1839 Male, age 51, unknown 16.8
2587 Male, age 74, left hemisphere 15.9
1913 Female, age 42, unknown 13.9
1895 Male, age 76, right hemisphere 13.5
2668 Female, age 75, unknown 9.6
1995 Male, age 72, unknown 6.9
Ventral tegmental area
nTPM: 27.8
2021 Male, age 53, unknown 44.6
1942 Male, age 51, unknown 34.3
2223 Female, age 72, unknown 27.8
2410 Female, age 72, unknown 23.0
1915 Female, age 42, unknown 20.0
2218 Male, age 76, both hemispheres 17.3

MIDBRAIN - GTEx RNA-seqi
Average nTPM 68.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 68.5
Samples: 139

Max nTPM: 197.5
Min nTPM: 3.8
Std nTPM: 44.7
Median nTPM: 57.6
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 197.5
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 190.6
GTEX-147GR-0011-R2b-SM-5S2RQ 60-69 years, male 182.5
GTEX-1E1VI-0011-R2a-SM-9QEGS 50-59 years, male 172.9
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 171.5
GTEX-P44G-0011-R2A-SM-2XCD2 30-39 years, male 167.1
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 158.3
GTEX-16Z82-0011-R2b-SM-79OK9 60-69 years, male 155.4
GTEX-XLM4-0011-R2B-SM-4AT5Z 60-69 years, male 149.5
GTEX-15DYW-0011-R2b-SM-7KUKY 60-69 years, female 144.3
GTEX-1IKJJ-0011-R2b-SM-ARZLJ 60-69 years, male 141.0
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 1.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 1.9
FF:10158-103A5 76 years, female 1.9

MIDBRAIN - Pig RNA-seqi
Average nTPM 47.5
Pig sample Sample description nTPM
Substantia nigra
nTPM: 44.1
Samples: 4

Max nTPM: 71.9
Min nTPM: 11.1
Sample A Female 71.9
Sample B Female 36.9
Sample C Male 56.3
Sample D Male 11.1
Midbrain
nTPM: 39.7
Samples: 4

Max nTPM: 60.2
Min nTPM: 9.8
Sample A Female 9.8
Sample B Female 41.1
Sample C Male 47.8
Sample D Male 60.2
Periaqueductal gray
nTPM: 47.5
Samples: 3

Max nTPM: 63.6
Min nTPM: 37.3
Sample B Female 41.6
Sample C Male 63.6
Sample D Male 37.3
Superior colliculi
nTPM: 30.1
Samples: 4

Max nTPM: 51.3
Min nTPM: 13.2
Sample A Female 51.3
Sample B Female 13.2
Sample C Male 23.9
Sample D Male 32.0

MIDBRAIN - Mouse RNA-seqi
Average nTPM 60.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 60.7
Samples: 4

Max nTPM: 81.9
Min nTPM: 44.2
Sample A Male 81.9
Sample B Male 54.6
Sample C Female 44.2
Sample D Female 62.0

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 5.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 5.4
70546093 Antisense, RP_050623_03_F01, Mouse strain C57BL/6J (56 days, male) 5.4
71924388 Antisense, RP_050623_03_F01, Mouse strain C57BL/6J (56 days, male) 3.7

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