MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:69.1 nTPM
HPA Brain:113.5 nTPM
GTEx:69.1 nTPM
FANTOM5:216.9 Scaled Tags Per Million
Pig:98.1 nTPM
Mouse:62.2 nTPM
Allen mouse:3.4 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 113.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 92.0
1830 Male, age 51, unknown 118.3
1870 Female, age 42, unknown 115.0
2411 Female, age 72, unknown 114.7
2019 Male, age 18, unknown 111.1
1833 Male, age 53, unknown 107.5
2828 Female, age 72, unknown 81.9
2586 Male, age 75, left hemisphere 70.9
1827 Male, age 72, unknown 69.0
2666 Male, age 74, left hemisphere 67.9
2219 Male, age 76, both hemispheres 63.6
Dorsal raphe nucleus
nTPM: 72.3
2750 Male, age 76, both hemispheres 105.9
2016 Female, age 72, unknown 76.3
1828 Male, age 53, unknown 67.1
2298 Female, age 72, unknown 57.0
2047 Male, age 72, unknown 55.4
Inferior colliculus
nTPM: 65.6
1848 Female, age 42, unknown 72.4
1890 Male, age 53, unknown 71.3
2849 Male, age 72, unknown 61.8
2097 Female, age 72, unknown 57.0
Median raphe nucleus
nTPM: 64.3
2220 Male, age 76, midline 64.3
Periaquaductal grey, anterior
nTPM: 67.5
2502 Female, age 75, unknown 85.8
1947 Male, age 18, unknown 64.4
1795 Male, age 51, unknown 52.4
Periaquaductal grey, dorsal
nTPM: 56.5
2464 Female, age 72, unknown 70.0
1831 Male, age 72, unknown 60.7
2850 Male, age 76, both hemispheres 50.9
1840 Male, age 53, unknown 44.1
Periaquaductal grey, lateral
nTPM: 61.7
2053 Male, age 18, unknown 71.7
2272 Male, age 74, both hemispheres 63.1
2140 Male, age 76, both hemispheres 50.3
Pretectal area
nTPM: 62.5
1815 Male, age 53, unknown 78.6
1817 Female, age 42, unknown 73.9
2407 Male, age 75, both hemispheres 72.7
2007 Male, age 72, unknown 72.2
2316 Male, age 76, right hemisphere 69.9
2273 Male, age 74, both hemispheres 61.0
2224 Female, age 72, unknown 58.4
2825 Male, age 18, unknown 57.7
2667 Female, age 75, unknown 57.0
1944 Female, age 72, unknown 45.4
1816 Male, age 51, unknown 40.6
Red nucleus
nTPM: 113.5
1865 Male, age 51, unknown 146.4
1904 Male, age 53, unknown 133.5
2227 Male, age 72, unknown 125.9
1821 Female, age 72, unknown 123.6
2769 Male, age 72, unknown 122.9
2503 Female, age 72, unknown 121.3
1954 Female, age 42, unknown 120.9
2785 Male, age 18, unknown 118.5
2823 Male, age 76, right hemisphere 106.8
2588 Male, age 74, left hemisphere 93.6
2725 Female, age 75, unknown 74.2
2584 Male, age 75, left hemisphere 74.1
Substantia nigra
nTPM: 72.6
2590 Female, age 75, unknown 92.8
2409 Female, age 72, unknown 88.6
2583 Male, age 75, right hemisphere 83.4
1851 Male, age 51, unknown 82.9
1889 Female, age 72, unknown 77.9
2699 Male, age 18, unknown 73.6
1916 Female, age 42, unknown 62.8
2665 Male, age 74, both hemispheres 59.3
1941 Male, age 53, unknown 57.5
2241 Male, age 72, unknown 46.9
Superior colliculus
nTPM: 76.3
1995 Male, age 72, unknown 119.0
1913 Female, age 42, unknown 110.7
2587 Male, age 74, left hemisphere 88.3
1839 Male, age 51, unknown 77.8
1895 Male, age 76, right hemisphere 76.1
2668 Female, age 75, unknown 69.7
1796 Male, age 53, unknown 66.5
2664 Male, age 75, both hemispheres 55.7
2087 Female, age 72, unknown 49.6
2261 Male, age 18, unknown 49.4
Ventral tegmental area
nTPM: 83.3
2410 Female, age 72, unknown 103.3
2223 Female, age 72, unknown 101.2
2218 Male, age 76, both hemispheres 76.5
1915 Female, age 42, unknown 74.0
2021 Male, age 53, unknown 73.0
1942 Male, age 51, unknown 72.2

MIDBRAIN - GTEx RNA-seqi
Average nTPM 69.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 69.1
Samples: 139

Max nTPM: 212.3
Min nTPM: 25.0
Std nTPM: 31.2
Median nTPM: 60.4
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 212.3
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 188.2
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 168.6
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 161.3
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 147.5
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 144.6
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 124.4
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 122.5
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 120.8
GTEX-T5JC-0011-R2A-SM-32PLZ 20-29 years, male 119.5
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 117.4
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 216.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 216.9
FF:10158-103A5 76 years, female 216.9

MIDBRAIN - Pig RNA-seqi
Average nTPM 98.1
Pig sample Sample description nTPM
Substantia nigra
nTPM: 93.2
Samples: 4

Max nTPM: 131.0
Min nTPM: 61.5
Sample A Female 100.2
Sample B Female 61.5
Sample C Male 80.1
Sample D Male 131.0
Midbrain
nTPM: 98.1
Samples: 4

Max nTPM: 207.1
Min nTPM: 43.1
Sample A Female 207.1
Sample B Female 99.0
Sample C Male 43.1
Sample D Male 43.1
Periaqueductal gray
nTPM: 74.5
Samples: 3

Max nTPM: 79.3
Min nTPM: 70.5
Sample B Female 79.3
Sample C Male 73.8
Sample D Male 70.5
Superior colliculi
nTPM: 73.7
Samples: 4

Max nTPM: 97.0
Min nTPM: 39.0
Sample A Female 97.0
Sample B Female 39.0
Sample C Male 66.4
Sample D Male 92.3

MIDBRAIN - Mouse RNA-seqi
Average nTPM 62.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 62.2
Samples: 4

Max nTPM: 67.0
Min nTPM: 55.3
Sample A Male 67.0
Sample B Male 55.3
Sample C Female 61.0
Sample D Female 65.4

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 3.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 3.4
68745114 Antisense, RP_050210_01_C07, Mouse strain C57BL/6J (56 days, male) 3.4

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