MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:11.9 nTPM
HPA Brain:45.8 nTPM
GTEx:11.9 nTPM
FANTOM5:40.4 Scaled Tags Per Million
Pig:25.8 nTPM
Mouse:23.1 nTPM
Allen mouse:0.7 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 45.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 36.4
2666 Male, age 74, left hemisphere 58.5
2586 Male, age 75, left hemisphere 46.4
2828 Female, age 72, unknown 42.8
1827 Male, age 72, unknown 42.7
2219 Male, age 76, both hemispheres 32.5
2019 Male, age 18, unknown 29.9
1833 Male, age 53, unknown 28.0
2411 Female, age 72, unknown 28.0
1870 Female, age 42, unknown 27.6
1830 Male, age 51, unknown 27.3
Dorsal raphe nucleus
nTPM: 30.3
2047 Male, age 72, unknown 35.8
2298 Female, age 72, unknown 31.4
1828 Male, age 53, unknown 30.4
2750 Male, age 76, both hemispheres 28.1
2016 Female, age 72, unknown 25.8
Inferior colliculus
nTPM: 33.2
2849 Male, age 72, unknown 36.0
1848 Female, age 42, unknown 33.6
2097 Female, age 72, unknown 32.5
1890 Male, age 53, unknown 30.7
Median raphe nucleus
nTPM: 32.1
2220 Male, age 76, midline 32.1
Periaquaductal grey, anterior
nTPM: 45.8
1795 Male, age 51, unknown 47.5
1947 Male, age 18, unknown 46.2
2502 Female, age 75, unknown 43.8
Periaquaductal grey, dorsal
nTPM: 34.1
2850 Male, age 76, both hemispheres 38.3
1840 Male, age 53, unknown 34.2
2464 Female, age 72, unknown 32.7
1831 Male, age 72, unknown 31.2
Periaquaductal grey, lateral
nTPM: 34.4
2140 Male, age 76, both hemispheres 43.2
2053 Male, age 18, unknown 33.7
2272 Male, age 74, both hemispheres 26.3
Pretectal area
nTPM: 38.4
1816 Male, age 51, unknown 53.5
2007 Male, age 72, unknown 47.7
1944 Female, age 72, unknown 42.3
1817 Female, age 42, unknown 40.4
1815 Male, age 53, unknown 39.9
2667 Female, age 75, unknown 39.4
2316 Male, age 76, right hemisphere 37.4
2825 Male, age 18, unknown 35.7
2407 Male, age 75, both hemispheres 33.7
2224 Female, age 72, unknown 30.0
2273 Male, age 74, both hemispheres 23.0
Red nucleus
nTPM: 28.8
2584 Male, age 75, left hemisphere 39.3
2785 Male, age 18, unknown 33.7
2588 Male, age 74, left hemisphere 32.2
2823 Male, age 76, right hemisphere 29.6
2769 Male, age 72, unknown 28.9
2227 Male, age 72, unknown 27.8
2503 Female, age 72, unknown 27.7
1954 Female, age 42, unknown 26.5
2725 Female, age 75, unknown 25.9
1865 Male, age 51, unknown 25.0
1904 Male, age 53, unknown 24.5
1821 Female, age 72, unknown 24.3
Substantia nigra
nTPM: 31.5
2665 Male, age 74, both hemispheres 38.6
1941 Male, age 53, unknown 37.5
1889 Female, age 72, unknown 36.6
1916 Female, age 42, unknown 35.2
2583 Male, age 75, right hemisphere 31.2
1851 Male, age 51, unknown 30.7
2590 Female, age 75, unknown 29.1
2699 Male, age 18, unknown 27.8
2241 Male, age 72, unknown 24.5
2409 Female, age 72, unknown 23.4
Superior colliculus
nTPM: 37.1
2664 Male, age 75, both hemispheres 48.3
1796 Male, age 53, unknown 47.5
2668 Female, age 75, unknown 42.4
2261 Male, age 18, unknown 42.2
2087 Female, age 72, unknown 41.9
1839 Male, age 51, unknown 33.7
1895 Male, age 76, right hemisphere 32.2
2587 Male, age 74, left hemisphere 29.5
1913 Female, age 42, unknown 28.1
1995 Male, age 72, unknown 25.3
Ventral tegmental area
nTPM: 30.3
1942 Male, age 51, unknown 32.8
2218 Male, age 76, both hemispheres 32.5
2410 Female, age 72, unknown 30.5
1915 Female, age 42, unknown 30.0
2223 Female, age 72, unknown 28.4
2021 Male, age 53, unknown 27.8

MIDBRAIN - GTEx RNA-seqi
Average nTPM 11.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 11.9
Samples: 139

Max nTPM: 30.4
Min nTPM: 4.4
Std nTPM: 3.8
Median nTPM: 11.8
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 30.4
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 21.7
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 21.1
GTEX-RU72-0011-R2A-SM-2TF6O 50-59 years, female 19.8
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 19.8
GTEX-14C5O-0011-R2a-SM-5ZZV2 60-69 years, male 19.7
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 18.1
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 18.0
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 17.7
GTEX-N7MS-0011-R2a-SM-2HML6 60-69 years, male 17.5
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 16.5
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 40.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 40.4
FF:10158-103A5 76 years, female 40.4

MIDBRAIN - Pig RNA-seqi
Average nTPM 25.8
Pig sample Sample description nTPM
Substantia nigra
nTPM: 20.5
Samples: 4

Max nTPM: 25.5
Min nTPM: 15.0
Sample A Female 23.7
Sample B Female 17.9
Sample C Male 25.5
Sample D Male 15.0
Midbrain
nTPM: 23.6
Samples: 4

Max nTPM: 36.7
Min nTPM: 15.9
Sample A Female 15.9
Sample B Female 16.5
Sample C Male 36.7
Sample D Male 25.1
Periaqueductal gray
nTPM: 17.8
Samples: 3

Max nTPM: 21.4
Min nTPM: 15.6
Sample B Female 15.6
Sample C Male 21.4
Sample D Male 16.4
Superior colliculi
nTPM: 25.8
Samples: 4

Max nTPM: 29.7
Min nTPM: 22.3
Sample A Female 24.0
Sample B Female 22.3
Sample C Male 29.7
Sample D Male 27.3

MIDBRAIN - Mouse RNA-seqi
Average nTPM 23.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 23.1
Samples: 4

Max nTPM: 23.6
Min nTPM: 22.2
Sample A Male 23.6
Sample B Male 22.2
Sample C Female 23.1
Sample D Female 23.6

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.7
68845335 Antisense, RP_050224_01_F02, Mouse strain C57BL/6J (56 days, male) 0.7

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