MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:17.6 nTPM
HPA Brain:12.3 nTPM
GTEx:17.6 nTPM
FANTOM5:38.7 Scaled Tags Per Million
Pig:13.6 nTPM
Mouse:38.4 nTPM
Allen mouse:2.9 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 12.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 8.4
2586 Male, age 75, left hemisphere 11.3
1827 Male, age 72, unknown 9.4
1870 Female, age 42, unknown 9.4
2411 Female, age 72, unknown 9.3
2828 Female, age 72, unknown 8.7
2019 Male, age 18, unknown 8.6
2666 Male, age 74, left hemisphere 7.1
1830 Male, age 51, unknown 7.0
2219 Male, age 76, both hemispheres 7.0
1833 Male, age 53, unknown 6.3
Dorsal raphe nucleus
nTPM: 12.3
2298 Female, age 72, unknown 19.9
2047 Male, age 72, unknown 11.7
2750 Male, age 76, both hemispheres 10.2
1828 Male, age 53, unknown 9.8
2016 Female, age 72, unknown 9.7
Inferior colliculus
nTPM: 7.2
2097 Female, age 72, unknown 9.7
1890 Male, age 53, unknown 7.3
1848 Female, age 42, unknown 6.0
2849 Male, age 72, unknown 5.7
Median raphe nucleus
nTPM: 10.1
2220 Male, age 76, midline 10.1
Periaquaductal grey, anterior
nTPM: 10.7
1795 Male, age 51, unknown 12.3
2502 Female, age 75, unknown 10.1
1947 Male, age 18, unknown 9.8
Periaquaductal grey, dorsal
nTPM: 7.5
1840 Male, age 53, unknown 9.6
2850 Male, age 76, both hemispheres 8.3
1831 Male, age 72, unknown 6.5
2464 Female, age 72, unknown 5.6
Periaquaductal grey, lateral
nTPM: 7.8
2272 Male, age 74, both hemispheres 10.6
2053 Male, age 18, unknown 7.1
2140 Male, age 76, both hemispheres 5.8
Pretectal area
nTPM: 8.8
2224 Female, age 72, unknown 10.2
1816 Male, age 51, unknown 10.0
2007 Male, age 72, unknown 10.0
2825 Male, age 18, unknown 9.3
1817 Female, age 42, unknown 9.1
1944 Female, age 72, unknown 9.0
2273 Male, age 74, both hemispheres 9.0
1815 Male, age 53, unknown 8.9
2667 Female, age 75, unknown 8.0
2407 Male, age 75, both hemispheres 7.7
2316 Male, age 76, right hemisphere 6.0
Red nucleus
nTPM: 7.7
2725 Female, age 75, unknown 10.3
2584 Male, age 75, left hemisphere 10.2
1821 Female, age 72, unknown 9.7
1904 Male, age 53, unknown 8.7
2769 Male, age 72, unknown 8.2
1954 Female, age 42, unknown 7.5
2227 Male, age 72, unknown 7.3
1865 Male, age 51, unknown 7.0
2785 Male, age 18, unknown 7.0
2503 Female, age 72, unknown 6.7
2588 Male, age 74, left hemisphere 6.2
2823 Male, age 76, right hemisphere 3.7
Substantia nigra
nTPM: 11.3
1916 Female, age 42, unknown 17.7
1851 Male, age 51, unknown 13.2
2241 Male, age 72, unknown 13.0
2583 Male, age 75, right hemisphere 12.5
2699 Male, age 18, unknown 11.1
1889 Female, age 72, unknown 10.4
1941 Male, age 53, unknown 9.4
2665 Male, age 74, both hemispheres 9.3
2590 Female, age 75, unknown 9.2
2409 Female, age 72, unknown 7.2
Superior colliculus
nTPM: 8.2
2664 Male, age 75, both hemispheres 10.5
2587 Male, age 74, left hemisphere 10.2
1796 Male, age 53, unknown 9.8
2087 Female, age 72, unknown 9.0
2261 Male, age 18, unknown 8.9
2668 Female, age 75, unknown 8.0
1995 Male, age 72, unknown 6.8
1839 Male, age 51, unknown 6.7
1913 Female, age 42, unknown 6.5
1895 Male, age 76, right hemisphere 5.1
Ventral tegmental area
nTPM: 10.4
2410 Female, age 72, unknown 11.8
1915 Female, age 42, unknown 11.6
2223 Female, age 72, unknown 10.9
2021 Male, age 53, unknown 9.8
1942 Male, age 51, unknown 9.7
2218 Male, age 76, both hemispheres 8.3

MIDBRAIN - GTEx RNA-seqi
Average nTPM 17.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 17.6
Samples: 139

Max nTPM: 34.9
Min nTPM: 8.8
Std nTPM: 4.2
Median nTPM: 17.3
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 34.9
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 28.5
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 28.2
GTEX-14BIN-0011-R2a-SM-5S2RJ 50-59 years, female 27.7
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 26.9
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 25.8
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 25.7
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 24.3
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 24.2
GTEX-13G51-0011-R2b-SM-5LZXS 60-69 years, male 24.0
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 23.4
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 38.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 38.7
FF:10158-103A5 76 years, female 38.7

MIDBRAIN - Pig RNA-seqi
Average nTPM 13.6
Pig sample Sample description nTPM
Substantia nigra
nTPM: 13.0
Samples: 4

Max nTPM: 17.4
Min nTPM: 9.7
Sample A Female 17.4
Sample B Female 10.8
Sample C Male 14.0
Sample D Male 9.7
Midbrain
nTPM: 13.4
Samples: 4

Max nTPM: 17.5
Min nTPM: 9.9
Sample A Female 14.0
Sample B Female 9.9
Sample C Male 17.5
Sample D Male 12.0
Periaqueductal gray
nTPM: 10.1
Samples: 3

Max nTPM: 12.3
Min nTPM: 8.4
Sample B Female 9.7
Sample C Male 12.3
Sample D Male 8.4
Superior colliculi
nTPM: 13.6
Samples: 4

Max nTPM: 15.9
Min nTPM: 11.5
Sample A Female 15.9
Sample B Female 12.7
Sample C Male 14.2
Sample D Male 11.5

MIDBRAIN - Mouse RNA-seqi
Average nTPM 38.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 38.4
Samples: 4

Max nTPM: 39.0
Min nTPM: 37.5
Sample A Male 37.5
Sample B Male 38.2
Sample C Female 38.8
Sample D Female 39.0

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 2.9
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 2.9
69671815 Antisense, RP_050428_02_D09, Mouse strain C57BL/6J (56 days, male) 2.9

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