MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:10.5 nTPM
HPA Brain:104.0 nTPM
GTEx:10.5 nTPM
FANTOM5:136.8 Scaled Tags Per Million
Pig:39.9 nTPM
Mouse:11.5 nTPM
Allen mouse:5.0 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 104.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 94.4
2019 Male, age 18, unknown 100.8
1833 Male, age 53, unknown 100.1
1830 Male, age 51, unknown 97.0
2666 Male, age 74, left hemisphere 96.8
1870 Female, age 42, unknown 96.1
2219 Male, age 76, both hemispheres 93.5
2411 Female, age 72, unknown 93.5
2828 Female, age 72, unknown 92.6
1827 Male, age 72, unknown 91.9
2586 Male, age 75, left hemisphere 81.7
Dorsal raphe nucleus
nTPM: 83.5
2750 Male, age 76, both hemispheres 96.3
2016 Female, age 72, unknown 82.3
1828 Male, age 53, unknown 82.0
2298 Female, age 72, unknown 79.2
2047 Male, age 72, unknown 77.8
Inferior colliculus
nTPM: 92.9
2097 Female, age 72, unknown 95.9
1848 Female, age 42, unknown 94.2
1890 Male, age 53, unknown 91.5
2849 Male, age 72, unknown 90.2
Median raphe nucleus
nTPM: 83.8
2220 Male, age 76, midline 83.8
Periaquaductal grey, anterior
nTPM: 86.8
1947 Male, age 18, unknown 92.8
2502 Female, age 75, unknown 87.6
1795 Male, age 51, unknown 80.1
Periaquaductal grey, dorsal
nTPM: 81.6
2464 Female, age 72, unknown 87.5
1831 Male, age 72, unknown 84.6
1840 Male, age 53, unknown 79.7
2850 Male, age 76, both hemispheres 74.9
Periaquaductal grey, lateral
nTPM: 84.1
2053 Male, age 18, unknown 87.6
2272 Male, age 74, both hemispheres 86.1
2140 Male, age 76, both hemispheres 78.7
Pretectal area
nTPM: 93.5
1817 Female, age 42, unknown 107.2
2007 Male, age 72, unknown 106.9
1816 Male, age 51, unknown 102.7
1815 Male, age 53, unknown 102.0
1944 Female, age 72, unknown 99.7
2667 Female, age 75, unknown 90.6
2273 Male, age 74, both hemispheres 87.8
2316 Male, age 76, right hemisphere 85.1
2825 Male, age 18, unknown 84.6
2407 Male, age 75, both hemispheres 84.3
2224 Female, age 72, unknown 77.8
Red nucleus
nTPM: 104.0
2823 Male, age 76, right hemisphere 113.0
1954 Female, age 42, unknown 112.7
1904 Male, age 53, unknown 112.4
1865 Male, age 51, unknown 109.8
1821 Female, age 72, unknown 108.1
2503 Female, age 72, unknown 106.7
2785 Male, age 18, unknown 104.9
2588 Male, age 74, left hemisphere 101.5
2227 Male, age 72, unknown 100.1
2769 Male, age 72, unknown 97.8
2725 Female, age 75, unknown 94.7
2584 Male, age 75, left hemisphere 85.9
Substantia nigra
nTPM: 89.0
1889 Female, age 72, unknown 95.6
2583 Male, age 75, right hemisphere 92.1
2409 Female, age 72, unknown 91.9
2590 Female, age 75, unknown 90.8
1916 Female, age 42, unknown 90.3
2241 Male, age 72, unknown 89.3
2665 Male, age 74, both hemispheres 88.9
1851 Male, age 51, unknown 88.3
1941 Male, age 53, unknown 84.6
2699 Male, age 18, unknown 78.0
Superior colliculus
nTPM: 94.1
1895 Male, age 76, right hemisphere 101.9
2668 Female, age 75, unknown 101.9
2087 Female, age 72, unknown 100.6
1913 Female, age 42, unknown 99.0
2261 Male, age 18, unknown 97.0
1995 Male, age 72, unknown 96.8
1796 Male, age 53, unknown 92.1
2587 Male, age 74, left hemisphere 91.2
1839 Male, age 51, unknown 89.1
2664 Male, age 75, both hemispheres 70.8
Ventral tegmental area
nTPM: 87.6
2410 Female, age 72, unknown 99.5
2223 Female, age 72, unknown 90.8
2218 Male, age 76, both hemispheres 89.8
1915 Female, age 42, unknown 84.9
1942 Male, age 51, unknown 83.0
2021 Male, age 53, unknown 77.9

MIDBRAIN - GTEx RNA-seqi
Average nTPM 10.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 10.5
Samples: 139

Max nTPM: 23.7
Min nTPM: 4.5
Std nTPM: 2.9
Median nTPM: 10.2
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 23.7
GTEX-1I1GV-0011-R2a-SM-ARZLF 60-69 years, male 18.6
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 18.2
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 17.9
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 17.4
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 17.0
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 16.8
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 16.6
GTEX-T5JC-0011-R2A-SM-32PLZ 20-29 years, male 15.2
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 15.2
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 15.1
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 136.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 136.8
FF:10158-103A5 76 years, female 136.8

MIDBRAIN - Pig RNA-seqi
Average nTPM 39.9
Pig sample Sample description nTPM
Substantia nigra
nTPM: 37.6
Samples: 4

Max nTPM: 40.1
Min nTPM: 34.7
Sample A Female 36.6
Sample B Female 34.7
Sample C Male 39.0
Sample D Male 40.1
Midbrain
nTPM: 39.9
Samples: 4

Max nTPM: 44.1
Min nTPM: 35.8
Sample A Female 44.1
Sample B Female 38.0
Sample C Male 41.8
Sample D Male 35.8
Periaqueductal gray
nTPM: 32.7
Samples: 3

Max nTPM: 33.7
Min nTPM: 30.9
Sample B Female 33.7
Sample C Male 33.5
Sample D Male 30.9
Superior colliculi
nTPM: 35.5
Samples: 4

Max nTPM: 39.8
Min nTPM: 29.3
Sample A Female 34.2
Sample B Female 29.3
Sample C Male 39.8
Sample D Male 38.5

MIDBRAIN - Mouse RNA-seqi
Average nTPM 11.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 11.5
Samples: 4

Max nTPM: 12.1
Min nTPM: 10.3
Sample A Male 10.3
Sample B Male 12.1
Sample C Female 11.7
Sample D Female 12.0

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 5.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 5.0
70228627 Antisense, RP_050524_04_B01, Mouse strain C57BL/6J (56 days, male) 5.0

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