MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:213.7 nTPM
HPA Brain:98.3 nTPM
GTEx:213.7 nTPM
FANTOM5:93.8 Scaled Tags Per Million
Mouse:140.6 nTPM
Allen mouse:1.1 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 98.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 82.6
2411 Female, age 72, unknown 105.8
1870 Female, age 42, unknown 94.8
2828 Female, age 72, unknown 86.3
1833 Male, age 53, unknown 85.4
2219 Male, age 76, both hemispheres 84.3
1827 Male, age 72, unknown 81.4
1830 Male, age 51, unknown 78.3
2666 Male, age 74, left hemisphere 70.7
2586 Male, age 75, left hemisphere 70.4
2019 Male, age 18, unknown 69.0
Dorsal raphe nucleus
nTPM: 94.0
2750 Male, age 76, both hemispheres 107.8
2298 Female, age 72, unknown 104.4
2047 Male, age 72, unknown 98.9
1828 Male, age 53, unknown 80.2
2016 Female, age 72, unknown 78.5
Inferior colliculus
nTPM: 79.9
2849 Male, age 72, unknown 85.3
1848 Female, age 42, unknown 79.9
1890 Male, age 53, unknown 78.0
2097 Female, age 72, unknown 76.4
Median raphe nucleus
nTPM: 94.7
2220 Male, age 76, midline 94.7
Periaquaductal grey, anterior
nTPM: 94.3
1947 Male, age 18, unknown 108.3
2502 Female, age 75, unknown 87.6
1795 Male, age 51, unknown 87.1
Periaquaductal grey, dorsal
nTPM: 78.2
1840 Male, age 53, unknown 92.1
2464 Female, age 72, unknown 80.8
2850 Male, age 76, both hemispheres 75.1
1831 Male, age 72, unknown 64.6
Periaquaductal grey, lateral
nTPM: 73.4
2053 Male, age 18, unknown 77.9
2140 Male, age 76, both hemispheres 73.4
2272 Male, age 74, both hemispheres 69.0
Pretectal area
nTPM: 79.7
2224 Female, age 72, unknown 88.9
2667 Female, age 75, unknown 88.2
1817 Female, age 42, unknown 85.0
2825 Male, age 18, unknown 83.5
1944 Female, age 72, unknown 83.3
1816 Male, age 51, unknown 79.8
2316 Male, age 76, right hemisphere 76.9
2007 Male, age 72, unknown 75.4
2273 Male, age 74, both hemispheres 75.2
1815 Male, age 53, unknown 74.4
2407 Male, age 75, both hemispheres 65.9
Red nucleus
nTPM: 84.6
2725 Female, age 75, unknown 98.2
2503 Female, age 72, unknown 96.5
1865 Male, age 51, unknown 94.6
1904 Male, age 53, unknown 89.4
1954 Female, age 42, unknown 88.3
2769 Male, age 72, unknown 87.2
1821 Female, age 72, unknown 86.8
2823 Male, age 76, right hemisphere 86.2
2227 Male, age 72, unknown 84.0
2785 Male, age 18, unknown 71.2
2588 Male, age 74, left hemisphere 67.1
2584 Male, age 75, left hemisphere 66.0
Substantia nigra
nTPM: 97.4
1916 Female, age 42, unknown 123.3
2241 Male, age 72, unknown 113.1
1851 Male, age 51, unknown 112.8
2409 Female, age 72, unknown 107.3
2699 Male, age 18, unknown 101.7
1889 Female, age 72, unknown 95.2
1941 Male, age 53, unknown 94.1
2590 Female, age 75, unknown 80.3
2665 Male, age 74, both hemispheres 77.2
2583 Male, age 75, right hemisphere 68.5
Superior colliculus
nTPM: 76.3
1913 Female, age 42, unknown 86.1
1796 Male, age 53, unknown 84.5
1895 Male, age 76, right hemisphere 83.5
2587 Male, age 74, left hemisphere 80.9
2261 Male, age 18, unknown 77.7
2087 Female, age 72, unknown 75.5
2668 Female, age 75, unknown 74.7
1839 Male, age 51, unknown 69.4
1995 Male, age 72, unknown 69.3
2664 Male, age 75, both hemispheres 61.4
Ventral tegmental area
nTPM: 98.3
2410 Female, age 72, unknown 116.5
1915 Female, age 42, unknown 110.3
2218 Male, age 76, both hemispheres 96.1
1942 Male, age 51, unknown 90.4
2223 Female, age 72, unknown 90.3
2021 Male, age 53, unknown 85.9

MIDBRAIN - GTEx RNA-seqi
Average nTPM 213.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 213.7
Samples: 139

Max nTPM: 519.5
Min nTPM: 95.8
Std nTPM: 64.2
Median nTPM: 202.7
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 519.5
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 462.8
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 436.7
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 398.5
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 353.9
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 337.7
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 332.1
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 323.6
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 320.7
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 319.9
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 319.6
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 93.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 93.8
FF:10158-103A5 76 years, female 93.8

MIDBRAIN - Mouse RNA-seqi
Average nTPM 140.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 140.6
Samples: 4

Max nTPM: 155.2
Min nTPM: 126.8
Sample A Male 155.2
Sample B Male 126.8
Sample C Female 131.2
Sample D Female 149.1

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 1.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.1
68744498 Antisense, RP_050208_01_A07, Mouse strain C57BL/6J (56 days, male) 1.1

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