HIPPOCAMPAL FORMATION - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:13.1 nTPM
HPA Brain:14.1 nTPM
GTEx:13.1 nTPM
FANTOM5:26.9 Scaled Tags Per Million
Pig:26.2 nTPM
Mouse:12.4 nTPM
Allen mouse:3.0 Expression energy

HIPPOCAMPAL FORMATION - Annotated protein expression
Pending normal tissue analysis

HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 14.1
Sample id Sample description nTPM
Hippocampus
nTPM: 13.5
2529 Female, age 94, left hemisphere 14.8
1898 Male, age 80, left hemisphere 14.7
2148 Female, age 91, left hemisphere 14.6
2621 Female, age 67, right hemisphere 12.8
1911 Female, age 85, right hemisphere 12.1
1855 Male, age 76, left hemisphere 12.0
Dentate gyrus
nTPM: 12.7
2010 Male, age 76, both hemispheres 15.6
2530 Female, age 94, left hemisphere 14.4
2531 Female, age 67, both hemispheres 12.9
2528 Male, age 74, both hemispheres 12.7
1927 Female, age 91, both hemispheres 11.0
2246 Female, age 85, both hemispheres 9.9
Entorhinal gyrus
nTPM: 14.1
2117 Female, age 91, right hemisphere 17.4
2686 Male, age 75, right hemisphere 16.8
1787 Male, age 76, left hemisphere 13.7
2613 Female, age 94, left hemisphere 13.5
2764 Male, age 80, right hemisphere 12.3
1938 Female, age 85, left hemisphere 10.8
Hippocampus, CA1
nTPM: 11.2
2749 Male, age 80, left hemisphere 13.8
2527 Male, age 74, both hemispheres 12.0
1873 Female, age 85, both hemispheres 11.1
2045 Male, age 76, both hemispheres 10.4
2082 Female, age 91, right hemisphere 8.8
Hippocampus, CA2
nTPM: 12.4
1940 Female, age 85, left hemisphere 15.4
2249 Male, age 74, both hemispheres 13.8
2437 Female, age 94, left hemisphere 13.6
1963 Male, age 80, left hemisphere 11.2
2113 Female, age 91, right hemisphere 10.6
1892 Male, age 76, both hemispheres 9.7
Hippocampus, CA3
nTPM: 12.0
2861 Female, age 67, both hemispheres 14.9
2620 Female, age 94, left hemisphere 12.8
1867 Male, age 76, both hemispheres 11.8
1891 Female, age 85, both hemispheres 11.5
2137 Male, age 80, left hemisphere 11.2
2436 Male, age 74, both hemispheres 9.6
Parahippocampal cortex
nTPM: 12.0
2250 Female, age 67, right hemisphere 14.1
1990 Female, age 91, right hemisphere 13.9
2018 Male, age 76, both hemispheres 13.6
2622 Female, age 67, right hemisphere 13.1
2245 Female, age 91, both hemispheres 12.4
2532 Female, age 72, left hemisphere 11.8
2692 Male, age 74, both hemispheres 11.5
1933 Female, age 85, both hemispheres 11.4
2693 Female, age 94, both hemispheres 10.2
1850 Male, age 80, both hemispheres 8.4
Perirhinal gyrus
nTPM: 10.0
2521 Female, age 94, right hemisphere 11.7
1847 Female, age 91, left hemisphere 10.9
1794 Male, age 80, right hemisphere 9.6
1841 Female, age 85, right hemisphere 8.9
2848 Male, age 76, right hemisphere 8.8
Subiculum
nTPM: 13.2
2042 Male, age 76, both hemispheres 15.2
2729 Female, age 91, right hemisphere 14.8
1901 Male, age 80, both hemispheres 13.8
1977 Female, age 85, both hemispheres 13.8
2619 Male, age 74, both hemispheres 13.8
2438 Female, age 94, left hemisphere 8.2

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 13.1
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 13.1
Samples: 197

Max nTPM: 54.7
Min nTPM: 5.2
Std nTPM: 6.7
Median nTPM: 11.7
GTEX-13OW5-0011-R1b-SM-5L3GE 60-69 years, male 54.7
GTEX-13NYS-0011-R1b-SM-5MR55 60-69 years, male 46.0
GTEX-13JUV-0011-R1a-SM-5LZY4 40-49 years, female 44.0
GTEX-1B996-0011-R1b-SM-7P8PO 60-69 years, male 44.0
GTEX-13N1W-0011-R1b-SM-5MR4T 70-79 years, male 33.5
GTEX-WHSE-0011-R1A-SM-3P5ZK 20-29 years, male 31.9
GTEX-P44G-0011-R1A-SM-2I3FE 30-39 years, male 30.3
GTEX-11TUW-0011-R1a-SM-DO92S 60-69 years, male 27.7
GTEX-1CB4J-0011-R1a-SM-9WG64 60-69 years, male 27.3
GTEX-14PQA-0011-R1b-SM-6EU1G 50-59 years, female 25.6
GTEX-WWYW-0011-R1A-SM-3TW8G 50-59 years, female 24.7
Show allShow less

HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 26.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 26.9
FF:10153-102I9 76 years, female 33.1
FF:10169-103B7 60 years, female 20.7

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 26.2
Pig sample Sample description nTPM
Subiculum
nTPM: 23.3
Samples: 4

Max nTPM: 29.7
Min nTPM: 20.5
Sample A Female 29.7
Sample B Female 20.5
Sample C Male 22.0
Sample D Male 20.9
Dorsal hippocampus
nTPM: 25.8
Samples: 4

Max nTPM: 30.6
Min nTPM: 19.6
Sample A Female 30.6
Sample B Female 28.1
Sample C Male 24.7
Sample D Male 19.6
Entorhinal cortex
nTPM: 21.3
Samples: 4

Max nTPM: 23.5
Min nTPM: 17.4
Sample A Female 23.5
Sample B Female 22.3
Sample C Male 21.9
Sample D Male 17.4
Ventral hippocampus
nTPM: 26.2
Samples: 4

Max nTPM: 35.1
Min nTPM: 19.3
Sample A Female 28.7
Sample B Female 19.3
Sample C Male 35.1
Sample D Male 21.6

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 12.4
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 12.4
Samples: 4

Max nTPM: 15.0
Min nTPM: 10.7
Sample A Male 11.8
Sample B Male 11.9
Sample C Female 10.7
Sample D Female 15.0
Hippocampal formation
nTPM: 10.0
Samples: 4

Max nTPM: 11.2
Min nTPM: 8.8
Sample A Male 8.8
Sample B Male 11.2
Sample C Female 10.7
Sample D Female 9.4

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 3.0
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 3.0
654929 Antisense, RP_040922_01_B03, Mouse strain C57BL/6J (56 days, male) 3.5
71789051 Antisense, RP_051010_03_C11, Mouse strain C57BL/6J (56 days, male) 2.5

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.


contact@proteinatlas.org