MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:50.4 nTPM
HPA Brain:81.0 nTPM
GTEx:50.4 nTPM
FANTOM5:84.2 Scaled Tags Per Million
Mouse:98.4 nTPM
Allen mouse:3.7 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 81.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 59.0
2411 Female, age 72, unknown 73.4
2219 Male, age 76, both hemispheres 65.3
1827 Male, age 72, unknown 64.0
1870 Female, age 42, unknown 63.5
2019 Male, age 18, unknown 61.9
1833 Male, age 53, unknown 57.9
2828 Female, age 72, unknown 55.3
1830 Male, age 51, unknown 54.1
2666 Male, age 74, left hemisphere 48.6
2586 Male, age 75, left hemisphere 46.2
Dorsal raphe nucleus
nTPM: 71.4
2298 Female, age 72, unknown 90.5
2047 Male, age 72, unknown 75.8
2750 Male, age 76, both hemispheres 69.6
1828 Male, age 53, unknown 67.3
2016 Female, age 72, unknown 53.6
Inferior colliculus
nTPM: 64.4
2097 Female, age 72, unknown 70.3
1848 Female, age 42, unknown 66.2
1890 Male, age 53, unknown 62.2
2849 Male, age 72, unknown 59.0
Median raphe nucleus
nTPM: 81.0
2220 Male, age 76, midline 81.0
Periaquaductal grey, anterior
nTPM: 73.0
1947 Male, age 18, unknown 79.5
1795 Male, age 51, unknown 70.0
2502 Female, age 75, unknown 69.5
Periaquaductal grey, dorsal
nTPM: 62.4
1840 Male, age 53, unknown 68.4
2850 Male, age 76, both hemispheres 66.4
2464 Female, age 72, unknown 58.6
1831 Male, age 72, unknown 56.2
Periaquaductal grey, lateral
nTPM: 66.1
2272 Male, age 74, both hemispheres 77.8
2053 Male, age 18, unknown 61.4
2140 Male, age 76, both hemispheres 59.0
Pretectal area
nTPM: 69.5
2273 Male, age 74, both hemispheres 79.6
1817 Female, age 42, unknown 78.5
1816 Male, age 51, unknown 77.4
1944 Female, age 72, unknown 77.4
2007 Male, age 72, unknown 73.6
2224 Female, age 72, unknown 70.9
2667 Female, age 75, unknown 69.0
1815 Male, age 53, unknown 68.8
2825 Male, age 18, unknown 57.4
2407 Male, age 75, both hemispheres 57.0
2316 Male, age 76, right hemisphere 54.4
Red nucleus
nTPM: 53.0
2725 Female, age 75, unknown 69.4
1821 Female, age 72, unknown 64.9
2785 Male, age 18, unknown 55.9
1904 Male, age 53, unknown 51.8
2584 Male, age 75, left hemisphere 51.4
1865 Male, age 51, unknown 50.6
1954 Female, age 42, unknown 50.2
2227 Male, age 72, unknown 50.2
2769 Male, age 72, unknown 50.1
2503 Female, age 72, unknown 48.5
2588 Male, age 74, left hemisphere 47.2
2823 Male, age 76, right hemisphere 46.2
Substantia nigra
nTPM: 78.0
1916 Female, age 42, unknown 110.4
2241 Male, age 72, unknown 99.2
1941 Male, age 53, unknown 87.9
1889 Female, age 72, unknown 82.5
1851 Male, age 51, unknown 80.8
2409 Female, age 72, unknown 72.8
2699 Male, age 18, unknown 68.8
2665 Male, age 74, both hemispheres 62.7
2590 Female, age 75, unknown 61.2
2583 Male, age 75, right hemisphere 53.8
Superior colliculus
nTPM: 59.0
2261 Male, age 18, unknown 67.7
2587 Male, age 74, left hemisphere 66.3
2087 Female, age 72, unknown 66.1
1796 Male, age 53, unknown 64.1
1895 Male, age 76, right hemisphere 62.7
1839 Male, age 51, unknown 61.5
2668 Female, age 75, unknown 57.8
1913 Female, age 42, unknown 52.4
1995 Male, age 72, unknown 47.3
2664 Male, age 75, both hemispheres 43.8
Ventral tegmental area
nTPM: 75.7
2218 Male, age 76, both hemispheres 92.1
2410 Female, age 72, unknown 86.4
1915 Female, age 42, unknown 81.1
1942 Male, age 51, unknown 69.8
2223 Female, age 72, unknown 64.9
2021 Male, age 53, unknown 59.7

MIDBRAIN - GTEx RNA-seqi
Average nTPM 50.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 50.4
Samples: 139

Max nTPM: 111.3
Min nTPM: 28.2
Std nTPM: 14.1
Median nTPM: 46.6
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 111.3
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 105.1
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 101.4
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 93.3
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 81.7
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 81.4
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 76.6
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 75.6
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 71.0
GTEX-11GSP-0011-R2b-SM-9QEGE 60-69 years, female 70.8
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 68.5
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 84.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 84.2
FF:10158-103A5 76 years, female 84.2

MIDBRAIN - Mouse RNA-seqi
Average nTPM 98.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 98.4
Samples: 4

Max nTPM: 105.2
Min nTPM: 90.8
Sample A Male 90.8
Sample B Male 101.8
Sample C Female 105.2
Sample D Female 95.7

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 3.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 3.7
71280982 Antisense, RP_050818_02_A02, Mouse strain C57BL/6J (56 days, male) 3.7

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