HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Not detected
Neuronal cells: High
RNA expressioni
Consensus:106.5 nTPM
HPA Brain:64.5 nTPM
GTEx:106.5 nTPM
FANTOM5:109.3 Scaled Tags Per Million
Pig:55.4 nTPM
Mouse:227.3 nTPM
Allen mouse:15.8 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA003404Antibody HPA077896
Glial cells Not detectedLow
Neuronal cells HighMedium





HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 64.5
Sample id Sample description nTPM
Hippocampus
nTPM: 55.9
1898 Male, age 80, left hemisphere 80.0
1855 Male, age 76, left hemisphere 57.4
2621 Female, age 67, right hemisphere 54.7
2529 Female, age 94, left hemisphere 50.3
1911 Female, age 85, right hemisphere 47.4
2148 Female, age 91, left hemisphere 45.3
Dentate gyrus
nTPM: 56.0
1927 Female, age 91, both hemispheres 67.7
2010 Male, age 76, both hemispheres 59.9
2246 Female, age 85, both hemispheres 55.4
2528 Male, age 74, both hemispheres 54.9
2530 Female, age 94, left hemisphere 54.1
2531 Female, age 67, both hemispheres 43.8
Entorhinal gyrus
nTPM: 50.2
1938 Female, age 85, left hemisphere 58.7
2764 Male, age 80, right hemisphere 56.3
2117 Female, age 91, right hemisphere 52.8
1787 Male, age 76, left hemisphere 52.2
2613 Female, age 94, left hemisphere 41.7
2686 Male, age 75, right hemisphere 39.8
Hippocampus, CA1
nTPM: 60.0
2749 Male, age 80, left hemisphere 78.2
1873 Female, age 85, both hemispheres 63.3
2527 Male, age 74, both hemispheres 60.6
2045 Male, age 76, both hemispheres 49.9
2082 Female, age 91, right hemisphere 47.9
Hippocampus, CA2
nTPM: 58.4
2249 Male, age 74, both hemispheres 72.5
1892 Male, age 76, both hemispheres 67.7
1963 Male, age 80, left hemisphere 56.8
2437 Female, age 94, left hemisphere 55.6
1940 Female, age 85, left hemisphere 52.1
2113 Female, age 91, right hemisphere 45.5
Hippocampus, CA3
nTPM: 57.3
2436 Male, age 74, both hemispheres 81.4
1867 Male, age 76, both hemispheres 67.8
1891 Female, age 85, both hemispheres 56.6
2137 Male, age 80, left hemisphere 54.6
2620 Female, age 94, left hemisphere 48.2
2861 Female, age 67, both hemispheres 35.4
Parahippocampal cortex
nTPM: 54.5
1850 Male, age 80, both hemispheres 73.7
1933 Female, age 85, both hemispheres 63.2
1990 Female, age 91, right hemisphere 59.7
2250 Female, age 67, right hemisphere 57.3
2693 Female, age 94, both hemispheres 55.9
2018 Male, age 76, both hemispheres 55.7
2245 Female, age 91, both hemispheres 48.6
2532 Female, age 72, left hemisphere 47.4
2692 Male, age 74, both hemispheres 44.4
2622 Female, age 67, right hemisphere 39.2
Perirhinal gyrus
nTPM: 64.5
1847 Female, age 91, left hemisphere 72.2
1794 Male, age 80, right hemisphere 71.7
1841 Female, age 85, right hemisphere 71.7
2521 Female, age 94, right hemisphere 55.7
2848 Male, age 76, right hemisphere 51.0
Subiculum
nTPM: 57.9
2438 Female, age 94, left hemisphere 71.6
1977 Female, age 85, both hemispheres 64.7
1901 Male, age 80, both hemispheres 62.6
2729 Female, age 91, right hemisphere 51.1
2042 Male, age 76, both hemispheres 50.4
2619 Male, age 74, both hemispheres 46.8

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 106.5
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 106.5
Samples: 197

Max nTPM: 331.7
Min nTPM: 53.6
Std nTPM: 29.9
Median nTPM: 102.4
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 331.7
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 195.0
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 187.5
GTEX-1F75A-0011-R1b-SM-CE6RA 50-59 years, male 181.9
GTEX-1EX96-0011-R1a-SM-CE6R5 50-59 years, male 165.1
GTEX-139TT-0011-R1a-SM-5LZVD 60-69 years, male 157.9
GTEX-13O3Q-0011-R1b-SM-5KM3L 50-59 years, male 157.1
GTEX-1IOXB-0011-R1a-SM-D4P27 50-59 years, male 156.2
GTEX-12WSF-0011-R1a-SM-5DUVI 70-79 years, male 154.2
GTEX-12WSH-0011-R1a-SM-5GU5V 50-59 years, male 152.3
GTEX-12WSE-0011-R1b-SM-5GU4V 20-29 years, male 151.3
Show allShow less

HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 109.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 109.3
FF:10169-103B7 60 years, female 147.4
FF:10153-102I9 76 years, female 71.3

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 55.4
Pig sample Sample description nTPM
Subiculum
nTPM: 50.4
Samples: 4

Max nTPM: 55.2
Min nTPM: 45.7
Sample A Female 55.2
Sample B Female 51.0
Sample C Male 45.7
Sample D Male 49.8
Dorsal hippocampus
nTPM: 55.4
Samples: 4

Max nTPM: 59.2
Min nTPM: 50.7
Sample A Female 59.2
Sample B Female 53.7
Sample C Male 57.8
Sample D Male 50.7
Entorhinal cortex
nTPM: 53.1
Samples: 4

Max nTPM: 64.2
Min nTPM: 48.1
Sample A Female 51.0
Sample B Female 64.2
Sample C Male 49.0
Sample D Male 48.1
Ventral hippocampus
nTPM: 51.0
Samples: 4

Max nTPM: 53.2
Min nTPM: 47.6
Sample A Female 53.2
Sample B Female 47.6
Sample C Male 52.9
Sample D Male 50.1

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 227.3
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 210.1
Samples: 4

Max nTPM: 232.0
Min nTPM: 196.4
Sample A Male 198.9
Sample B Male 213.1
Sample C Female 232.0
Sample D Female 196.4
Hippocampal formation
nTPM: 227.3
Samples: 4

Max nTPM: 261.8
Min nTPM: 213.5
Sample A Male 261.8
Sample B Male 213.5
Sample C Female 217.5
Sample D Female 216.3

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 15.8
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 15.8
77371763 Antisense, RP_070116_01_D05, Mouse strain C57BL/6J (56 days, male) 21.6
68080679 Antisense, RP_040929_01_D09, Mouse strain C57BL/6J (56 days, male) 17.3
71213788 Antisense, RP_050816_04_F06, Mouse strain C57BL/6J (56 days, male) 8.5

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.


contact@proteinatlas.org