MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:17.8 nTPM
HPA Brain:71.2 nTPM
GTEx:17.8 nTPM
FANTOM5:58.2 Scaled Tags Per Million
Pig:34.0 nTPM
Mouse:134.7 nTPM
Allen mouse:12.7 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 71.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 52.7
1870 Female, age 42, unknown 59.6
1827 Male, age 72, unknown 59.0
2411 Female, age 72, unknown 58.7
2828 Female, age 72, unknown 54.9
1833 Male, age 53, unknown 53.6
2219 Male, age 76, both hemispheres 51.8
2666 Male, age 74, left hemisphere 50.2
1830 Male, age 51, unknown 50.1
2586 Male, age 75, left hemisphere 48.9
2019 Male, age 18, unknown 39.8
Dorsal raphe nucleus
nTPM: 64.9
2047 Male, age 72, unknown 76.9
2298 Female, age 72, unknown 76.3
2750 Male, age 76, both hemispheres 59.9
1828 Male, age 53, unknown 56.0
2016 Female, age 72, unknown 55.2
Inferior colliculus
nTPM: 49.7
2849 Male, age 72, unknown 54.5
2097 Female, age 72, unknown 50.6
1890 Male, age 53, unknown 47.9
1848 Female, age 42, unknown 45.9
Median raphe nucleus
nTPM: 70.7
2220 Male, age 76, midline 70.7
Periaquaductal grey, anterior
nTPM: 55.7
1947 Male, age 18, unknown 60.3
1795 Male, age 51, unknown 59.7
2502 Female, age 75, unknown 47.1
Periaquaductal grey, dorsal
nTPM: 65.5
2850 Male, age 76, both hemispheres 74.4
1840 Male, age 53, unknown 73.9
1831 Male, age 72, unknown 57.2
2464 Female, age 72, unknown 56.5
Periaquaductal grey, lateral
nTPM: 71.2
2140 Male, age 76, both hemispheres 77.2
2272 Male, age 74, both hemispheres 70.9
2053 Male, age 18, unknown 65.5
Pretectal area
nTPM: 55.5
2273 Male, age 74, both hemispheres 70.2
2224 Female, age 72, unknown 70.0
2825 Male, age 18, unknown 70.0
2316 Male, age 76, right hemisphere 61.8
2407 Male, age 75, both hemispheres 57.9
2667 Female, age 75, unknown 56.1
1816 Male, age 51, unknown 49.3
1944 Female, age 72, unknown 47.1
1815 Male, age 53, unknown 45.7
1817 Female, age 42, unknown 41.3
2007 Male, age 72, unknown 40.8
Red nucleus
nTPM: 49.2
2725 Female, age 75, unknown 54.6
2588 Male, age 74, left hemisphere 53.5
1904 Male, age 53, unknown 51.9
1865 Male, age 51, unknown 51.3
2227 Male, age 72, unknown 51.2
2769 Male, age 72, unknown 50.7
2823 Male, age 76, right hemisphere 50.4
2584 Male, age 75, left hemisphere 49.2
1821 Female, age 72, unknown 48.4
2503 Female, age 72, unknown 48.0
1954 Female, age 42, unknown 42.8
2785 Male, age 18, unknown 38.0
Substantia nigra
nTPM: 50.9
2699 Male, age 18, unknown 62.6
2590 Female, age 75, unknown 53.3
1916 Female, age 42, unknown 53.0
1851 Male, age 51, unknown 52.7
2583 Male, age 75, right hemisphere 51.8
2409 Female, age 72, unknown 51.0
2241 Male, age 72, unknown 50.2
2665 Male, age 74, both hemispheres 50.1
1889 Female, age 72, unknown 42.6
1941 Male, age 53, unknown 42.4
Superior colliculus
nTPM: 51.4
1796 Male, age 53, unknown 58.9
2261 Male, age 18, unknown 54.3
2664 Male, age 75, both hemispheres 52.8
2587 Male, age 74, left hemisphere 50.7
1839 Male, age 51, unknown 50.5
1895 Male, age 76, right hemisphere 50.3
2668 Female, age 75, unknown 49.8
1913 Female, age 42, unknown 49.7
1995 Male, age 72, unknown 48.7
2087 Female, age 72, unknown 48.1
Ventral tegmental area
nTPM: 57.2
2021 Male, age 53, unknown 67.6
2223 Female, age 72, unknown 58.4
1942 Male, age 51, unknown 56.9
1915 Female, age 42, unknown 56.6
2218 Male, age 76, both hemispheres 56.4
2410 Female, age 72, unknown 47.6

MIDBRAIN - GTEx RNA-seqi
Average nTPM 17.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 17.8
Samples: 139

Max nTPM: 54.6
Min nTPM: 4.3
Std nTPM: 7.0
Median nTPM: 17.9
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 54.6
GTEX-WHSE-0011-R2A-SM-3P5ZL 20-29 years, male 34.8
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 33.0
GTEX-N7MS-0011-R2a-SM-2HML6 60-69 years, male 31.5
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 30.7
GTEX-14C5O-0011-R2a-SM-5ZZV2 60-69 years, male 29.4
GTEX-14JG1-0011-R2a-SM-5ZZVE 40-49 years, male 29.3
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 28.7
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 27.9
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 26.4
GTEX-S7SE-0011-R2A-SM-2XCDC 50-59 years, male 26.3
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 58.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 58.2
FF:10158-103A5 76 years, female 58.2

MIDBRAIN - Pig RNA-seqi
Average nTPM 34.0
Pig sample Sample description nTPM
Substantia nigra
nTPM: 26.2
Samples: 4

Max nTPM: 35.7
Min nTPM: 16.1
Sample A Female 35.7
Sample B Female 20.9
Sample C Male 32.2
Sample D Male 16.1
Midbrain
nTPM: 25.1
Samples: 4

Max nTPM: 31.8
Min nTPM: 21.4
Sample A Female 31.8
Sample B Female 23.9
Sample C Male 21.4
Sample D Male 23.2
Periaqueductal gray
nTPM: 34.0
Samples: 3

Max nTPM: 43.8
Min nTPM: 27.8
Sample B Female 27.8
Sample C Male 43.8
Sample D Male 30.5
Superior colliculi
nTPM: 19.8
Samples: 4

Max nTPM: 25.1
Min nTPM: 15.5
Sample A Female 25.1
Sample B Female 19.4
Sample C Male 15.5
Sample D Male 19.3

MIDBRAIN - Mouse RNA-seqi
Average nTPM 134.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 134.8
Samples: 4

Max nTPM: 141.6
Min nTPM: 125.2
Sample A Male 141.6
Sample B Male 133.7
Sample C Female 125.2
Sample D Female 138.5

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 12.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 12.7
77465028 Antisense, RP_070129_03_A03, Mouse strain C57BL/6J (56 days, male) 12.7

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