MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:3.7 nTPM
HPA Brain:131.6 nTPM
GTEx:3.7 nTPM
FANTOM5:23.8 Scaled Tags Per Million
Pig:3.3 nTPM
Mouse:3.5 nTPM
Allen mouse:0.4 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 131.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 127.8
2219 Male, age 76, both hemispheres 245.0
2828 Female, age 72, unknown 148.8
2411 Female, age 72, unknown 139.2
2019 Male, age 18, unknown 136.9
1870 Female, age 42, unknown 130.0
2586 Male, age 75, left hemisphere 116.4
1833 Male, age 53, unknown 109.7
1830 Male, age 51, unknown 105.6
1827 Male, age 72, unknown 88.6
2666 Male, age 74, left hemisphere 57.6
Dorsal raphe nucleus
nTPM: 100.8
2750 Male, age 76, both hemispheres 146.1
2047 Male, age 72, unknown 102.7
2016 Female, age 72, unknown 93.5
1828 Male, age 53, unknown 88.6
2298 Female, age 72, unknown 73.3
Inferior colliculus
nTPM: 122.9
2849 Male, age 72, unknown 165.4
1890 Male, age 53, unknown 150.5
1848 Female, age 42, unknown 112.8
2097 Female, age 72, unknown 62.8
Median raphe nucleus
nTPM: 106.7
2220 Male, age 76, midline 106.7
Periaquaductal grey, anterior
nTPM: 87.7
1795 Male, age 51, unknown 117.5
2502 Female, age 75, unknown 85.9
1947 Male, age 18, unknown 59.6
Periaquaductal grey, dorsal
nTPM: 131.6
2850 Male, age 76, both hemispheres 196.3
2464 Female, age 72, unknown 150.7
1840 Male, age 53, unknown 111.9
1831 Male, age 72, unknown 67.7
Periaquaductal grey, lateral
nTPM: 96.4
2140 Male, age 76, both hemispheres 116.2
2272 Male, age 74, both hemispheres 103.3
2053 Male, age 18, unknown 69.6
Pretectal area
nTPM: 83.0
2667 Female, age 75, unknown 102.6
2007 Male, age 72, unknown 98.2
2407 Male, age 75, both hemispheres 97.9
1815 Male, age 53, unknown 95.8
2273 Male, age 74, both hemispheres 84.9
1816 Male, age 51, unknown 80.7
2825 Male, age 18, unknown 80.4
2224 Female, age 72, unknown 79.1
1817 Female, age 42, unknown 71.1
2316 Male, age 76, right hemisphere 63.1
1944 Female, age 72, unknown 58.8
Red nucleus
nTPM: 119.3
2503 Female, age 72, unknown 201.0
2588 Male, age 74, left hemisphere 174.2
2769 Male, age 72, unknown 150.2
2227 Male, age 72, unknown 143.7
1865 Male, age 51, unknown 142.3
2785 Male, age 18, unknown 124.7
2823 Male, age 76, right hemisphere 100.1
1904 Male, age 53, unknown 98.7
1954 Female, age 42, unknown 93.2
2584 Male, age 75, left hemisphere 80.1
2725 Female, age 75, unknown 70.3
1821 Female, age 72, unknown 53.4
Substantia nigra
nTPM: 106.1
2409 Female, age 72, unknown 153.5
2590 Female, age 75, unknown 144.8
2699 Male, age 18, unknown 122.4
1916 Female, age 42, unknown 111.9
2583 Male, age 75, right hemisphere 111.4
1851 Male, age 51, unknown 92.6
1941 Male, age 53, unknown 92.5
1889 Female, age 72, unknown 87.6
2665 Male, age 74, both hemispheres 77.0
2241 Male, age 72, unknown 67.2
Superior colliculus
nTPM: 97.0
2261 Male, age 18, unknown 122.8
1995 Male, age 72, unknown 114.8
1913 Female, age 42, unknown 110.3
2587 Male, age 74, left hemisphere 102.9
1796 Male, age 53, unknown 100.0
2087 Female, age 72, unknown 98.5
2668 Female, age 75, unknown 84.4
1839 Male, age 51, unknown 81.8
1895 Male, age 76, right hemisphere 80.1
2664 Male, age 75, both hemispheres 74.1
Ventral tegmental area
nTPM: 121.9
2410 Female, age 72, unknown 146.3
2218 Male, age 76, both hemispheres 141.3
2021 Male, age 53, unknown 125.9
2223 Female, age 72, unknown 116.6
1942 Male, age 51, unknown 101.7
1915 Female, age 42, unknown 99.7

MIDBRAIN - GTEx RNA-seqi
Average nTPM 3.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 3.7
Samples: 139

Max nTPM: 7.1
Min nTPM: 1.4
Std nTPM: 1.0
Median nTPM: 3.8
GTEX-QMR6-0011-R2A-SM-32PKV 50-59 years, male 7.1
GTEX-1I1GV-0011-R2a-SM-ARZLF 60-69 years, male 6.2
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 6.0
GTEX-XMD1-0011-R2B-SM-4AT5N 60-69 years, male 5.5
GTEX-1F6I4-0011-R2a-SM-CL536 60-69 years, male 5.5
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 5.5
GTEX-13RTJ-0011-R2a-SM-5PNW9 60-69 years, male 5.4
GTEX-15CHQ-0011-R2b-SM-6AJAD 60-69 years, male 5.4
GTEX-15RJE-0011-R2b-SM-79OMP 40-49 years, male 5.3
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 5.3
GTEX-T2IS-0011-R2A-SM-32QPF 20-29 years, female 5.3
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 23.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 23.8
FF:10158-103A5 76 years, female 23.8

MIDBRAIN - Pig RNA-seqi
Average nTPM 3.3
Pig sample Sample description nTPM
Substantia nigra
nTPM: 2.4
Samples: 4

Max nTPM: 3.0
Min nTPM: 2.1
Sample A Female 2.1
Sample B Female 2.2
Sample C Male 2.1
Sample D Male 3.0
Midbrain
nTPM: 3.4
Samples: 4

Max nTPM: 4.0
Min nTPM: 2.5
Sample A Female 2.5
Sample B Female 3.1
Sample C Male 3.8
Sample D Male 4.0
Periaqueductal gray
nTPM: 3.1
Samples: 3

Max nTPM: 3.5
Min nTPM: 2.8
Sample B Female 3.0
Sample C Male 2.8
Sample D Male 3.5
Superior colliculi
nTPM: 3.3
Samples: 4

Max nTPM: 4.0
Min nTPM: 2.7
Sample A Female 2.9
Sample B Female 2.7
Sample C Male 3.6
Sample D Male 4.0

MIDBRAIN - Mouse RNA-seqi
Average nTPM 3.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 3.5
Samples: 4

Max nTPM: 3.9
Min nTPM: 3.3
Sample A Male 3.4
Sample B Male 3.9
Sample C Female 3.5
Sample D Female 3.3

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.4
73606576 Antisense, RP_051130_01_B12, Mouse strain C57BL/6J (56 days, male) 0.4

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