HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Medium
Neuronal cells: Medium
RNA expressioni
Consensus:53.5 nTPM
HPA Brain:39.3 nTPM
GTEx:53.5 nTPM
FANTOM5:23.8 Scaled Tags Per Million
Pig:9.6 nTPM
Mouse:48.6 nTPM
Allen mouse:0.2 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA019469
Glial cells Medium
Neuronal cells Medium



HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 39.3
Sample id Sample description nTPM
Hippocampus
nTPM: 27.8
1898 Male, age 80, left hemisphere 36.5
2529 Female, age 94, left hemisphere 32.4
1855 Male, age 76, left hemisphere 30.3
2621 Female, age 67, right hemisphere 26.3
2148 Female, age 91, left hemisphere 21.4
1911 Female, age 85, right hemisphere 19.7
Dentate gyrus
nTPM: 30.3
2010 Male, age 76, both hemispheres 46.6
1927 Female, age 91, both hemispheres 31.6
2530 Female, age 94, left hemisphere 26.9
2531 Female, age 67, both hemispheres 26.5
2528 Male, age 74, both hemispheres 26.0
2246 Female, age 85, both hemispheres 24.3
Entorhinal gyrus
nTPM: 24.2
1787 Male, age 76, left hemisphere 30.5
1938 Female, age 85, left hemisphere 29.5
2764 Male, age 80, right hemisphere 28.0
2117 Female, age 91, right hemisphere 22.5
2686 Male, age 75, right hemisphere 17.3
2613 Female, age 94, left hemisphere 17.1
Hippocampus, CA1
nTPM: 39.3
2045 Male, age 76, both hemispheres 70.5
2749 Male, age 80, left hemisphere 43.1
1873 Female, age 85, both hemispheres 30.5
2527 Male, age 74, both hemispheres 28.4
2082 Female, age 91, right hemisphere 23.9
Hippocampus, CA2
nTPM: 36.1
1892 Male, age 76, both hemispheres 73.9
1963 Male, age 80, left hemisphere 43.9
2249 Male, age 74, both hemispheres 28.0
2437 Female, age 94, left hemisphere 26.4
1940 Female, age 85, left hemisphere 24.7
2113 Female, age 91, right hemisphere 19.8
Hippocampus, CA3
nTPM: 37.2
1867 Male, age 76, both hemispheres 82.6
2137 Male, age 80, left hemisphere 35.8
2620 Female, age 94, left hemisphere 28.3
2436 Male, age 74, both hemispheres 27.5
1891 Female, age 85, both hemispheres 26.8
2861 Female, age 67, both hemispheres 22.1
Parahippocampal cortex
nTPM: 27.0
2018 Male, age 76, both hemispheres 36.8
1850 Male, age 80, both hemispheres 33.2
2250 Female, age 67, right hemisphere 29.9
1933 Female, age 85, both hemispheres 29.2
2245 Female, age 91, both hemispheres 27.7
1990 Female, age 91, right hemisphere 27.4
2532 Female, age 72, left hemisphere 26.0
2692 Male, age 74, both hemispheres 21.0
2622 Female, age 67, right hemisphere 20.6
2693 Female, age 94, both hemispheres 18.8
Perirhinal gyrus
nTPM: 30.2
1847 Female, age 91, left hemisphere 36.5
1794 Male, age 80, right hemisphere 33.3
1841 Female, age 85, right hemisphere 32.3
2848 Male, age 76, right hemisphere 27.2
2521 Female, age 94, right hemisphere 21.7
Subiculum
nTPM: 32.6
2042 Male, age 76, both hemispheres 59.4
1901 Male, age 80, both hemispheres 30.8
2438 Female, age 94, left hemisphere 30.8
1977 Female, age 85, both hemispheres 29.0
2619 Male, age 74, both hemispheres 23.6
2729 Female, age 91, right hemisphere 21.8

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 53.5
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 53.5
Samples: 197

Max nTPM: 178.1
Min nTPM: 23.2
Std nTPM: 23.7
Median nTPM: 48.4
GTEX-1GN73-0011-R1a-SM-CKZNT 60-69 years, male 178.1
GTEX-13NZ8-0011-R1b-SM-5KM3V 60-69 years, female 161.2
GTEX-1CB4J-0011-R1a-SM-9WG64 60-69 years, male 153.7
GTEX-1A32A-0011-R1a-SM-7P8SQ 50-59 years, female 129.2
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 126.3
GTEX-1B996-0011-R1b-SM-7P8PO 60-69 years, male 125.8
GTEX-13N1W-0011-R1b-SM-5MR4T 70-79 years, male 116.2
GTEX-1EX96-0011-R1a-SM-CE6R5 50-59 years, male 115.7
GTEX-13PDP-0011-R1a-SM-5PNX5 60-69 years, male 113.7
GTEX-13OVJ-0011-R1b-SM-5L3I6 50-59 years, female 96.6
GTEX-11TUW-0011-R1a-SM-DO92S 60-69 years, male 95.5
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 23.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 23.8
FF:10169-103B7 60 years, female 27.0
FF:10153-102I9 76 years, female 20.7

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 9.6
Pig sample Sample description nTPM
Subiculum
nTPM: 9.4
Samples: 4

Max nTPM: 16.7
Min nTPM: 5.2
Sample A Female 16.7
Sample B Female 5.2
Sample C Male 6.4
Sample D Male 9.3
Dorsal hippocampus
nTPM: 8.6
Samples: 4

Max nTPM: 12.8
Min nTPM: 6.3
Sample A Female 12.8
Sample B Female 6.3
Sample C Male 6.6
Sample D Male 8.5
Entorhinal cortex
nTPM: 8.6
Samples: 4

Max nTPM: 10.5
Min nTPM: 6.3
Sample A Female 10.5
Sample B Female 6.3
Sample C Male 7.0
Sample D Male 10.4
Ventral hippocampus
nTPM: 9.6
Samples: 4

Max nTPM: 11.7
Min nTPM: 6.1
Sample A Female 11.7
Sample B Female 6.1
Sample C Male 9.2
Sample D Male 11.4

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 48.6
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 48.6
Samples: 4

Max nTPM: 51.4
Min nTPM: 45.6
Sample A Male 45.6
Sample B Male 48.6
Sample C Female 48.7
Sample D Female 51.4
Hippocampal formation
nTPM: 41.8
Samples: 4

Max nTPM: 47.5
Min nTPM: 37.9
Sample A Male 47.5
Sample B Male 37.9
Sample C Female 40.2
Sample D Female 41.6

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 0.2
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 0.2
68798121 Antisense, RP_050215_01_G09, Mouse strain C57BL/6J (56 days, male) 0.2

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