MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:37.6 nTPM
HPA Brain:62.3 nTPM
GTEx:37.6 nTPM
FANTOM5:65.4 Scaled Tags Per Million
Pig:41.3 nTPM
Mouse:47.5 nTPM
Allen mouse:4.6 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 62.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 47.5
2411 Female, age 72, unknown 62.7
1827 Male, age 72, unknown 54.8
2019 Male, age 18, unknown 52.9
2586 Male, age 75, left hemisphere 49.0
2828 Female, age 72, unknown 45.3
1870 Female, age 42, unknown 44.6
1833 Male, age 53, unknown 43.9
2219 Male, age 76, both hemispheres 43.7
1830 Male, age 51, unknown 39.2
2666 Male, age 74, left hemisphere 38.4
Dorsal raphe nucleus
nTPM: 57.5
2298 Female, age 72, unknown 78.3
2047 Male, age 72, unknown 61.2
2750 Male, age 76, both hemispheres 52.4
1828 Male, age 53, unknown 51.0
2016 Female, age 72, unknown 44.7
Inferior colliculus
nTPM: 48.0
2097 Female, age 72, unknown 60.8
1890 Male, age 53, unknown 47.2
1848 Female, age 42, unknown 44.8
2849 Male, age 72, unknown 39.2
Median raphe nucleus
nTPM: 57.8
2220 Male, age 76, midline 57.8
Periaquaductal grey, anterior
nTPM: 62.3
1795 Male, age 51, unknown 65.9
1947 Male, age 18, unknown 63.0
2502 Female, age 75, unknown 57.9
Periaquaductal grey, dorsal
nTPM: 46.5
2464 Female, age 72, unknown 49.2
2850 Male, age 76, both hemispheres 47.5
1840 Male, age 53, unknown 46.6
1831 Male, age 72, unknown 42.8
Periaquaductal grey, lateral
nTPM: 57.2
2272 Male, age 74, both hemispheres 78.2
2053 Male, age 18, unknown 48.3
2140 Male, age 76, both hemispheres 45.2
Pretectal area
nTPM: 56.9
1816 Male, age 51, unknown 75.3
2007 Male, age 72, unknown 67.8
2273 Male, age 74, both hemispheres 64.6
1817 Female, age 42, unknown 62.8
1944 Female, age 72, unknown 61.9
2667 Female, age 75, unknown 58.6
1815 Male, age 53, unknown 52.9
2224 Female, age 72, unknown 52.3
2825 Male, age 18, unknown 45.8
2316 Male, age 76, right hemisphere 44.5
2407 Male, age 75, both hemispheres 39.9
Red nucleus
nTPM: 44.5
2785 Male, age 18, unknown 54.0
2584 Male, age 75, left hemisphere 53.3
2725 Female, age 75, unknown 53.2
2769 Male, age 72, unknown 44.3
2503 Female, age 72, unknown 43.7
2227 Male, age 72, unknown 43.6
1821 Female, age 72, unknown 43.4
2588 Male, age 74, left hemisphere 43.4
1904 Male, age 53, unknown 43.2
1954 Female, age 42, unknown 40.6
2823 Male, age 76, right hemisphere 36.5
1865 Male, age 51, unknown 35.3
Substantia nigra
nTPM: 46.5
1916 Female, age 42, unknown 65.0
1889 Female, age 72, unknown 56.9
1851 Male, age 51, unknown 53.7
1941 Male, age 53, unknown 50.2
2241 Male, age 72, unknown 44.4
2409 Female, age 72, unknown 42.2
2665 Male, age 74, both hemispheres 40.8
2590 Female, age 75, unknown 40.2
2583 Male, age 75, right hemisphere 37.6
2699 Male, age 18, unknown 34.1
Superior colliculus
nTPM: 47.7
2261 Male, age 18, unknown 63.2
1796 Male, age 53, unknown 60.7
2087 Female, age 72, unknown 56.3
2668 Female, age 75, unknown 45.4
1895 Male, age 76, right hemisphere 44.9
1913 Female, age 42, unknown 43.5
1839 Male, age 51, unknown 43.4
1995 Male, age 72, unknown 41.7
2587 Male, age 74, left hemisphere 40.3
2664 Male, age 75, both hemispheres 37.2
Ventral tegmental area
nTPM: 52.8
2410 Female, age 72, unknown 67.6
2218 Male, age 76, both hemispheres 55.3
1915 Female, age 42, unknown 52.5
1942 Male, age 51, unknown 50.4
2021 Male, age 53, unknown 47.2
2223 Female, age 72, unknown 43.7

MIDBRAIN - GTEx RNA-seqi
Average nTPM 37.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 37.6
Samples: 139

Max nTPM: 76.9
Min nTPM: 14.8
Std nTPM: 11.7
Median nTPM: 36.4
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 76.9
GTEX-1E1VI-0011-R2a-SM-9QEGS 50-59 years, male 68.2
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 65.8
GTEX-13OW8-0011-R2a-SM-5L3G2 60-69 years, male 65.2
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 62.1
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 59.4
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 57.5
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 57.4
GTEX-147GR-0011-R2b-SM-5S2RQ 60-69 years, male 56.3
GTEX-11GSP-0011-R2b-SM-9QEGE 60-69 years, female 55.6
GTEX-15DYW-0011-R2b-SM-7KUKY 60-69 years, female 54.0
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 65.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 65.4
FF:10158-103A5 76 years, female 65.4

MIDBRAIN - Pig RNA-seqi
Average nTPM 41.3
Pig sample Sample description nTPM
Substantia nigra
nTPM: 29.4
Samples: 4

Max nTPM: 43.6
Min nTPM: 18.8
Sample A Female 43.6
Sample B Female 22.7
Sample C Male 32.5
Sample D Male 18.8
Midbrain
nTPM: 34.4
Samples: 4

Max nTPM: 41.7
Min nTPM: 26.7
Sample A Female 27.9
Sample B Female 26.7
Sample C Male 41.7
Sample D Male 41.1
Periaqueductal gray
nTPM: 27.6
Samples: 3

Max nTPM: 33.2
Min nTPM: 23.8
Sample B Female 25.9
Sample C Male 33.2
Sample D Male 23.8
Superior colliculi
nTPM: 41.3
Samples: 4

Max nTPM: 50.2
Min nTPM: 34.4
Sample A Female 50.2
Sample B Female 34.4
Sample C Male 43.4
Sample D Male 37.3

MIDBRAIN - Mouse RNA-seqi
Average nTPM 47.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 47.6
Samples: 4

Max nTPM: 54.2
Min nTPM: 42.8
Sample A Male 54.2
Sample B Male 46.3
Sample C Female 42.8
Sample D Female 46.9

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 4.6
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 4.6
69443130 Antisense, RP_050414_03_E03, Mouse strain C57BL/6J (56 days, male) 4.6

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