MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:30.9 nTPM
HPA Brain:76.7 nTPM
GTEx:30.9 nTPM
FANTOM5:148.2 Scaled Tags Per Million
Pig:66.0 nTPM
Mouse:26.8 nTPM
Allen mouse:0.3 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 76.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 53.5
2666 Male, age 74, left hemisphere 69.2
2586 Male, age 75, left hemisphere 60.1
2828 Female, age 72, unknown 57.5
1870 Female, age 42, unknown 57.1
1827 Male, age 72, unknown 54.5
1830 Male, age 51, unknown 49.0
1833 Male, age 53, unknown 48.3
2019 Male, age 18, unknown 46.9
2411 Female, age 72, unknown 46.5
2219 Male, age 76, both hemispheres 45.7
Dorsal raphe nucleus
nTPM: 65.8
2016 Female, age 72, unknown 79.3
1828 Male, age 53, unknown 77.0
2298 Female, age 72, unknown 65.6
2047 Male, age 72, unknown 57.7
2750 Male, age 76, both hemispheres 49.2
Inferior colliculus
nTPM: 76.7
1890 Male, age 53, unknown 84.0
2097 Female, age 72, unknown 80.9
1848 Female, age 42, unknown 76.0
2849 Male, age 72, unknown 65.9
Median raphe nucleus
nTPM: 44.0
2220 Male, age 76, midline 44.0
Periaquaductal grey, anterior
nTPM: 60.0
2502 Female, age 75, unknown 73.0
1795 Male, age 51, unknown 55.2
1947 Male, age 18, unknown 51.7
Periaquaductal grey, dorsal
nTPM: 69.6
1840 Male, age 53, unknown 75.9
1831 Male, age 72, unknown 72.9
2464 Female, age 72, unknown 66.5
2850 Male, age 76, both hemispheres 62.8
Periaquaductal grey, lateral
nTPM: 58.8
2140 Male, age 76, both hemispheres 60.8
2272 Male, age 74, both hemispheres 58.1
2053 Male, age 18, unknown 57.5
Pretectal area
nTPM: 61.2
2224 Female, age 72, unknown 76.7
1816 Male, age 51, unknown 71.3
1944 Female, age 72, unknown 68.7
1817 Female, age 42, unknown 66.1
2316 Male, age 76, right hemisphere 60.8
2273 Male, age 74, both hemispheres 58.5
2825 Male, age 18, unknown 58.0
2007 Male, age 72, unknown 57.9
1815 Male, age 53, unknown 55.5
2407 Male, age 75, both hemispheres 53.5
2667 Female, age 75, unknown 46.4
Red nucleus
nTPM: 56.9
2503 Female, age 72, unknown 72.4
2725 Female, age 75, unknown 62.6
2227 Male, age 72, unknown 60.9
2769 Male, age 72, unknown 60.1
2584 Male, age 75, left hemisphere 59.5
1821 Female, age 72, unknown 58.1
1954 Female, age 42, unknown 58.1
1904 Male, age 53, unknown 57.2
1865 Male, age 51, unknown 56.6
2785 Male, age 18, unknown 48.9
2823 Male, age 76, right hemisphere 48.3
2588 Male, age 74, left hemisphere 40.6
Substantia nigra
nTPM: 67.3
2665 Male, age 74, both hemispheres 94.6
2699 Male, age 18, unknown 82.0
2583 Male, age 75, right hemisphere 71.2
2590 Female, age 75, unknown 69.7
2241 Male, age 72, unknown 68.6
1916 Female, age 42, unknown 61.4
1851 Male, age 51, unknown 59.1
2409 Female, age 72, unknown 58.6
1889 Female, age 72, unknown 58.3
1941 Male, age 53, unknown 49.2
Superior colliculus
nTPM: 60.4
2261 Male, age 18, unknown 77.0
2087 Female, age 72, unknown 66.9
1839 Male, age 51, unknown 64.9
1995 Male, age 72, unknown 63.1
2587 Male, age 74, left hemisphere 62.6
2664 Male, age 75, both hemispheres 61.5
1913 Female, age 42, unknown 58.8
2668 Female, age 75, unknown 54.3
1796 Male, age 53, unknown 54.1
1895 Male, age 76, right hemisphere 41.2
Ventral tegmental area
nTPM: 60.6
2021 Male, age 53, unknown 73.8
2410 Female, age 72, unknown 63.2
1942 Male, age 51, unknown 61.0
1915 Female, age 42, unknown 60.0
2218 Male, age 76, both hemispheres 57.7
2223 Female, age 72, unknown 47.8

MIDBRAIN - GTEx RNA-seqi
Average nTPM 30.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 30.9
Samples: 139

Max nTPM: 96.1
Min nTPM: 4.6
Std nTPM: 14.3
Median nTPM: 27.7
GTEX-NPJ8-0011-R2a-SM-2TC6M 40-49 years, male 96.1
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 78.3
GTEX-PWO3-0011-R2A-SM-2S1OX 60-69 years, female 72.2
GTEX-14PN4-0011-R2a-SM-6EU2Y 50-59 years, male 66.7
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 60.8
GTEX-NL4W-0011-R2a-SM-2I5GV 50-59 years, male 60.3
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 59.7
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 59.4
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 55.1
GTEX-OHPN-0011-R2A-SM-2I5FB 60-69 years, female 53.8
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 50.2
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 148.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 148.2
FF:10158-103A5 76 years, female 148.2

MIDBRAIN - Pig RNA-seqi
Average nTPM 66.0
Pig sample Sample description nTPM
Substantia nigra
nTPM: 52.0
Samples: 4

Max nTPM: 61.9
Min nTPM: 44.5
Sample A Female 54.4
Sample B Female 61.9
Sample C Male 47.3
Sample D Male 44.5
Midbrain
nTPM: 66.0
Samples: 4

Max nTPM: 123.9
Min nTPM: 39.0
Sample A Female 123.9
Sample B Female 55.7
Sample C Male 39.0
Sample D Male 45.5
Periaqueductal gray
nTPM: 62.4
Samples: 3

Max nTPM: 75.9
Min nTPM: 55.5
Sample B Female 55.9
Sample C Male 55.5
Sample D Male 75.9
Superior colliculi
nTPM: 38.0
Samples: 4

Max nTPM: 47.7
Min nTPM: 32.8
Sample A Female 47.7
Sample B Female 32.8
Sample C Male 34.1
Sample D Male 37.5

MIDBRAIN - Mouse RNA-seqi
Average nTPM 26.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 26.8
Samples: 4

Max nTPM: 27.7
Min nTPM: 25.1
Sample A Male 25.1
Sample B Male 27.1
Sample C Female 27.7
Sample D Female 27.4

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.3
69735729 Antisense, RP_050503_03_D08, Mouse strain C57BL/6J (56 days, male) 0.6
73520993 Antisense, RP_051101_02_G12, Mouse strain C57BL/6J (56 days, male) 0.1

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