MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:216.0 nTPM
HPA Brain:247.8 nTPM
GTEx:216.0 nTPM
FANTOM5:250.2 Scaled Tags Per Million
Pig:179.0 nTPM
Mouse:249.1 nTPM
Allen mouse:11.6 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 247.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 227.7
2586 Male, age 75, left hemisphere 415.3
2828 Female, age 72, unknown 250.9
2019 Male, age 18, unknown 250.6
1827 Male, age 72, unknown 237.6
2666 Male, age 74, left hemisphere 208.2
1833 Male, age 53, unknown 204.2
1870 Female, age 42, unknown 190.0
2219 Male, age 76, both hemispheres 181.3
1830 Male, age 51, unknown 180.8
2411 Female, age 72, unknown 158.3
Dorsal raphe nucleus
nTPM: 215.7
2047 Male, age 72, unknown 250.1
2298 Female, age 72, unknown 232.1
1828 Male, age 53, unknown 222.8
2016 Female, age 72, unknown 190.5
2750 Male, age 76, both hemispheres 182.8
Inferior colliculus
nTPM: 224.9
2849 Male, age 72, unknown 258.4
1848 Female, age 42, unknown 218.9
2097 Female, age 72, unknown 211.8
1890 Male, age 53, unknown 210.5
Median raphe nucleus
nTPM: 246.9
2220 Male, age 76, midline 246.9
Periaquaductal grey, anterior
nTPM: 227.1
1795 Male, age 51, unknown 252.4
1947 Male, age 18, unknown 223.5
2502 Female, age 75, unknown 205.3
Periaquaductal grey, dorsal
nTPM: 218.1
2850 Male, age 76, both hemispheres 251.3
1840 Male, age 53, unknown 232.3
1831 Male, age 72, unknown 203.7
2464 Female, age 72, unknown 185.3
Periaquaductal grey, lateral
nTPM: 203.6
2140 Male, age 76, both hemispheres 220.9
2272 Male, age 74, both hemispheres 211.3
2053 Male, age 18, unknown 178.6
Pretectal area
nTPM: 243.5
1817 Female, age 42, unknown 303.0
1816 Male, age 51, unknown 286.7
2007 Male, age 72, unknown 273.5
1944 Female, age 72, unknown 267.3
2407 Male, age 75, both hemispheres 250.7
1815 Male, age 53, unknown 249.2
2667 Female, age 75, unknown 248.3
2273 Male, age 74, both hemispheres 232.4
2224 Female, age 72, unknown 210.3
2825 Male, age 18, unknown 204.8
2316 Male, age 76, right hemisphere 152.0
Red nucleus
nTPM: 200.4
2584 Male, age 75, left hemisphere 255.7
2785 Male, age 18, unknown 238.8
2725 Female, age 75, unknown 216.5
1821 Female, age 72, unknown 203.9
1954 Female, age 42, unknown 198.4
2769 Male, age 72, unknown 196.8
1865 Male, age 51, unknown 194.5
2503 Female, age 72, unknown 185.8
2227 Male, age 72, unknown 181.8
2823 Male, age 76, right hemisphere 180.2
1904 Male, age 53, unknown 180.1
2588 Male, age 74, left hemisphere 172.4
Substantia nigra
nTPM: 247.8
1916 Female, age 42, unknown 307.6
2583 Male, age 75, right hemisphere 289.1
2665 Male, age 74, both hemispheres 273.6
1941 Male, age 53, unknown 269.0
1851 Male, age 51, unknown 249.3
1889 Female, age 72, unknown 248.7
2699 Male, age 18, unknown 238.1
2590 Female, age 75, unknown 216.1
2409 Female, age 72, unknown 195.1
2241 Male, age 72, unknown 191.1
Superior colliculus
nTPM: 228.8
2664 Male, age 75, both hemispheres 349.5
2668 Female, age 75, unknown 248.9
1796 Male, age 53, unknown 246.7
2087 Female, age 72, unknown 244.5
2261 Male, age 18, unknown 227.0
1839 Male, age 51, unknown 204.9
1995 Male, age 72, unknown 203.8
2587 Male, age 74, left hemisphere 201.7
1913 Female, age 42, unknown 186.9
1895 Male, age 76, right hemisphere 173.8
Ventral tegmental area
nTPM: 212.8
1915 Female, age 42, unknown 230.9
2218 Male, age 76, both hemispheres 221.8
1942 Male, age 51, unknown 213.1
2410 Female, age 72, unknown 210.3
2223 Female, age 72, unknown 208.8
2021 Male, age 53, unknown 192.1

MIDBRAIN - GTEx RNA-seqi
Average nTPM 216.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 216.0
Samples: 139

Max nTPM: 609.3
Min nTPM: 75.1
Std nTPM: 78.4
Median nTPM: 205.5
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 609.3
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 461.0
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 451.2
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 418.7
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 401.6
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 386.3
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 378.0
GTEX-11GSP-0011-R2b-SM-9QEGE 60-69 years, female 360.0
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 355.8
GTEX-1C6VR-0011-R2a-SM-7RHGZ 60-69 years, male 337.7
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 333.7
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 250.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 250.2
FF:10158-103A5 76 years, female 250.2

MIDBRAIN - Pig RNA-seqi
Average nTPM 179.0
Pig sample Sample description nTPM
Substantia nigra
nTPM: 125.6
Samples: 4

Max nTPM: 167.4
Min nTPM: 68.1
Sample A Female 167.4
Sample B Female 100.4
Sample C Male 166.3
Sample D Male 68.1
Midbrain
nTPM: 154.5
Samples: 4

Max nTPM: 255.6
Min nTPM: 96.6
Sample A Female 96.6
Sample B Female 100.6
Sample C Male 255.6
Sample D Male 165.3
Periaqueductal gray
nTPM: 112.7
Samples: 3

Max nTPM: 148.9
Min nTPM: 89.6
Sample B Female 89.6
Sample C Male 148.9
Sample D Male 99.6
Superior colliculi
nTPM: 179.0
Samples: 4

Max nTPM: 241.5
Min nTPM: 111.9
Sample A Female 188.9
Sample B Female 111.9
Sample C Male 241.5
Sample D Male 173.8

MIDBRAIN - Mouse RNA-seqi
Average nTPM 249.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 249.1
Samples: 4

Max nTPM: 263.9
Min nTPM: 240.4
Sample A Male 245.2
Sample B Male 240.4
Sample C Female 263.9
Sample D Female 246.9

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 11.6
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 11.6
68162255 Antisense, RP_041122_02_E12, Mouse strain C57BL/6J (56 days, male) 21.9
1948 Antisense, RP_040507_01_F08, Mouse strain C57BL/6J (56 days, male) 1.2

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