BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Not detected
Neuronal cells: Medium
RNA expressioni
Consensus:28.2 nTPM
HPA Brain:52.9 nTPM
GTEx:28.2 nTPM
FANTOM5:72.3 Scaled Tags Per Million
Pig:13.8 nTPM
Mouse:41.7 nTPM
Allen mouse:12.8 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA027405Antibody HPA027459Antibody HPA027463
Glial cells LowNot detectedLow
Neuronal cells HighMediumLow







BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 52.9
Sample id Sample description nTPM
Caudate nucleus
nTPM: 47.2
1781 Male, age 74, unknown 54.3
2290 Female, age 72, unknown 52.6
2289 Male, age 61, right hemisphere 51.7
2846 Female, age 79, unknown 47.0
2288 Male, age 75, left hemisphere 46.7
1854 Male, age 80, left hemisphere 44.3
1857 Female, age 85, left hemisphere 43.4
2481 Female, age 94, left hemisphere 37.2
Globus pallidus, externus
nTPM: 47.2
2567 Female, age 72, unknown 58.0
2646 Male, age 61, right hemisphere 56.3
2772 Female, age 79, unknown 43.7
1996 Male, age 80, right hemisphere 40.0
2395 Male, age 75, both hemispheres 37.8
Globus pallidus, internus
nTPM: 42.3
2566 Female, age 72, unknown 48.7
2111 Female, age 85, right hemisphere 45.0
1818 Male, age 74, unknown 44.1
2483 Female, age 94, right hemisphere 43.2
2778 Female, age 91, both hemispheres 41.3
2037 Male, age 80, right hemisphere 37.7
2287 Male, age 75, right hemisphere 36.2
Nucleus accumbens
nTPM: 46.4
1783 Male, age 74, unknown 56.7
2824 Male, age 61, right hemisphere 49.3
1806 Female, age 85, left hemisphere 46.7
2732 Male, age 80, right hemisphere 45.7
1856 Female, age 91, right hemisphere 44.9
2698 Female, age 72, unknown 44.6
2391 Female, age 94, left hemisphere 42.3
2286 Male, age 75, left hemisphere 41.1
Nucleus basalis of Meynert
nTPM: 48.4
2484 Female, age 94, left hemisphere 52.8
2569 Male, age 61, both hemispheres 52.5
2821 Male, age 75, both hemispheres 47.2
2393 Male, age 80, right hemisphere 41.2
Nucleus of the diagonal band
nTPM: 47.9
2195 Female, age 85, both hemispheres 53.2
2775 Male, age 80, right hemisphere 49.4
2029 Male, age 61, right hemisphere 48.5
1979 Male, age 74, unknown 44.8
1812 Female, age 91, both hemispheres 43.5
Putamen
nTPM: 51.0
2647 Male, age 75, left hemisphere 61.1
2489 Female, age 72, unknown 57.0
1838 Male, age 80, right hemisphere 50.5
2466 Female, age 79, unknown 49.1
1829 Male, age 74, unknown 47.1
2482 Female, age 94, left hemisphere 46.7
1937 Female, age 91, right hemisphere 45.7
Septal nuclei
nTPM: 48.0
1960 Male, age 74, unknown 59.4
2059 Female, age 85, both hemispheres 50.4
2031 Female, age 72, unknown 49.1
2629 Female, age 94, right hemisphere 46.7
2199 Male, age 80, right hemisphere 44.2
2394 Male, age 61, left hemisphere 43.5
2009 Female, age 91, both hemispheres 43.1
Stria terminalis, bed nucleus
nTPM: 52.9
1974 Female, age 91, both hemispheres 53.9
2486 Female, age 94, both hemispheres 53.8
2201 Male, age 74, unknown 50.9

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 28.2
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 25.0
Samples: 246

Max nTPM: 44.3
Min nTPM: 11.2
Std nTPM: 5.9
Median nTPM: 25.4
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 44.3
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 39.4
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 39.1
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 38.1
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 37.4
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 37.4
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 37.2
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 36.8
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 35.3
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 35.2
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 35.1
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 28.2
Samples: 246

Max nTPM: 50.6
Min nTPM: 7.3
Std nTPM: 7.5
Median nTPM: 28.6
GTEX-X585-0011-R6A-SM-46MVJ 50-59 years, male 50.6
GTEX-1HR9M-0011-R6a-SM-ARU6Z 60-69 years, male 50.2
GTEX-14PQA-0011-R6b-SM-6AJAM 50-59 years, female 47.3
GTEX-1I1CD-0011-R6b-SM-CJI3Y 60-69 years, female 44.9
GTEX-13FLV-0011-R6a-SM-5KLZ4 50-59 years, male 44.2
GTEX-13JUV-0011-R6b-SM-5LZYG 40-49 years, female 44.0
GTEX-XMD1-0011-R6A-SM-4AT5K 60-69 years, male 42.4
GTEX-18464-0011-R6a-SM-731CA 50-59 years, male 42.1
GTEX-12WSH-0011-R6b-SM-5P9F4 50-59 years, male 41.9
GTEX-13FHO-0011-R6b-SM-5LZX1 60-69 years, male 41.8
GTEX-ZDXO-0011-R6a-SM-4WWCT 60-69 years, male 41.7
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Brain - Putamen (basal ganglia)
Average nTPM: 24.8
Samples: 205

Max nTPM: 42.0
Min nTPM: 8.3
Std nTPM: 6.2
Median nTPM: 25.1
GTEX-WL46-0011-R7A-SM-3LK7X 50-59 years, male 42.0
GTEX-1B996-0011-R7b-SM-7IGNT 60-69 years, male 38.9
GTEX-12WSI-0011-R7b-SM-5GU78 50-59 years, male 37.0
GTEX-XLM4-0011-R7A-SM-4AT5L 60-69 years, male 36.7
GTEX-1B933-0011-R7a-SM-7DUGX 50-59 years, female 36.4
GTEX-1ICLZ-0011-R7a-SM-ARZLU 60-69 years, male 35.4
GTEX-1H3NZ-0011-R7a-SM-A9SKD 60-69 years, male 35.1
GTEX-12WSC-0011-R7b-SM-5LU9L 50-59 years, male 34.9
GTEX-13N1W-0011-R7b-SM-5MR4F 70-79 years, male 34.9
GTEX-15RJE-0011-R7a-SM-7DHL9 40-49 years, male 34.6
GTEX-139TT-0011-R7b-SM-5J2MN 60-69 years, male 34.3
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 72.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 70.6
FF:10164-103B2 76 years, female 70.6
Nucleus accumbens
Scaled Tags Per Million: 62.6
FF:10037-101F1 23-56 years, mixed 62.6
Putamen
Scaled Tags Per Million: 72.3
FF:10176-103C5 60 years, female 72.3
Globus pallidus
Scaled Tags Per Million: 64.8
FF:10175-103C4 60 years, female 67.4
FF:10161-103A8 76 years, female 62.2

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 13.8
Pig sample Sample description nTPM
Caudate
nTPM: 12.3
Samples: 4

Max nTPM: 14.0
Min nTPM: 9.9
Sample A Female 9.9
Sample B Female 14.0
Sample C Male 13.5
Sample D Male 11.7
Putamen
nTPM: 12.6
Samples: 4

Max nTPM: 14.5
Min nTPM: 11.6
Sample A Female 12.7
Sample B Female 11.7
Sample C Male 11.6
Sample D Male 14.5
Septum
nTPM: 13.2
Samples: 4

Max nTPM: 16.8
Min nTPM: 10.7
Sample A Female 12.4
Sample B Female 12.7
Sample C Male 16.8
Sample D Male 10.7
Ventral pallidum
nTPM: 13.8
Samples: 4

Max nTPM: 19.2
Min nTPM: 11.0
Sample A Female 11.0
Sample B Female 13.0
Sample C Male 19.2
Sample D Male 12.0

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 41.7
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 40.8
Samples: 4

Max nTPM: 42.4
Min nTPM: 38.1
Sample A Male 42.4
Sample B Male 38.1
Sample C Female 41.7
Sample D Female 40.8
Septum
nTPM: 39.1
Samples: 4

Max nTPM: 42.1
Min nTPM: 36.1
Sample A Male 40.4
Sample B Male 42.1
Sample C Female 37.7
Sample D Female 36.1
Ventral forebrain
nTPM: 41.7
Samples: 4

Max nTPM: 43.7
Min nTPM: 40.4
Sample A Male 40.4
Sample B Male 41.8
Sample C Female 40.9
Sample D Female 43.7

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 12.8
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 12.8
67815935 Antisense, RP_040920_02_A10, Mouse strain C57BL/6J (56 days, male) 12.8
Pallidum
Expression energy: 11.3
67815935 Antisense, RP_040920_02_A10, Mouse strain C57BL/6J (56 days, male) 11.3

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